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[Association between gene polymorphisms of Perforin 1 and hemophagocytic lymphohistiocytosis]
Xiao-Hua Huang1, Jian-Ming Luo, Qiong Bin
1Department of Pediatrics, First Affiliated Hospital of Guangxi Medical University, Nanning 530021, China. jmluo@aliyun.com.
Insights
This study found no link between PRF1 gene polymorphisms and hemophagocytic lymphohistiocytosis (HLH) susceptibility in children. The PRF1 gene variations investigated do not appear to increase the risk of developing HLH.
Area of Science:
- Genetics
- Immunology
- Pediatrics
Context:
- Hemophagocytic lymphohistiocytosis (HLH) is a rare, life-threatening hyperinflammatory syndrome.
- Genetic factors are implicated in HLH pathogenesis, but specific gene associations require further investigation.
- The PRF1 gene encodes perforin, a key molecule in cytotoxic T lymphocyte and natural killer cell function, making it a candidate for HLH association studies.
Purpose:
- To determine the frequency distribution of PRF1 gene polymorphisms in children diagnosed with HLH.
- To investigate whether specific PRF1 gene polymorphisms are associated with an increased risk of susceptibility to HLH in a pediatric cohort.
Summary:
- The study genotyped the PRF1 gene in 48 children with HLH and 100 healthy controls using PCR and direct sequencing.
- Three single nucleotide polymorphisms (SNPs) were found in the coding region and seven in the noncoding region of PRF1.
- No significant differences in allelic frequencies or A-T haplotype distribution were observed between the HLH and control groups, indicating no association between PRF1 polymorphisms and HLH susceptibility.
Impact:
- This research suggests that common PRF1 gene polymorphisms are not a significant risk factor for developing HLH in the studied pediatric population.
- The findings contribute to understanding the genetic landscape of HLH, potentially guiding future research towards other genetic contributors.
- While a linkage disequilibrium was noted between rs10999426 and rs10999427, their low detection rate in healthy children suggests they do not confer a protective effect against HLH.
Objective:
To investigate frequency distribution of gene polymorphisms of PRF1 gene in children with hemophagocytic lymphohistiocytosis (HLH), and to explore whether the possible gene polymorphisms of PRF1 gene confer an increased risk of susceptibility to HLH.
Methods:
Forty-eight children who were diagnosed with HLH between January 2009 and December 2013 (HLH group) and 100 healthy children (control group) were enrolled in this study. The gene polymorphisms in the coding region of PRF1 gene, which consists of three exons and two introns, were genotyped by PCR, followed by direct sequencing.
Results:
Three single nucleotide polymorphisms (SNPs) were revealed in the coding sequence of PRF1 in the 48 children with HLH. Seven SNPs were detected in the noncoding sequence. Other two SNPs in the noncoding sequence including rs10999426 and rs10999427 were detected only in 5 healthy children (5%). There was no significant difference in allelic frequencies of all the SNPs above between the HLH and control groups (P>0.05). Haplotype analysis showed there was a pair-wise linkage disequilibrium between rs10999426 and rs10999427 (D=1, r2=1), but there was no significant difference in the distribution of A-T haplotype between the HLH and control groups (P>0.05).
Conclusions:
There is no association between gene polymorphisms of PRF1 gene and the susceptibility to HLH. There is a pair-wise linkage disequilibrium between rs10999426 and rs10999427, but a low detection rate of A-T haplotype in healthy children indicates that it might not play a protective role in the development of HLH.
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