Related Experiment Video
Updated: Apr 5, 2026

12:05
A Simple, Robust, and High Throughput Single Molecule Flow Stretching Assay Implementation for Studying Transport of Molecules Along DNA
Published on: October 1, 2017
8.7K
Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.
John M Franck1,2, Yuan Ding3, Katherine Stone1,4
1Department of Chemistry and Biochemistry, University of California , Santa Barbara, California 93106, United States.
Journal of the American Chemical Society
|August 11, 2015
Summary
Overhauser effect dynamic nuclear polarization (ODNP) reveals DNA surface water moves unusually fast, unlike water near proteins or membranes. This fast-moving water may lower activation barriers for DNA interactions.
Area of Science:
- Biophysics
- Chemical Physics
- Molecular Biology
Background:
- The Overhauser effect dynamic nuclear polarization (ODNP) technique probes water mobility near surfaces.
- Understanding water dynamics at DNA surfaces is crucial for molecular interactions.
Purpose of the Study:
- To expand ODNP capabilities for measuring water dynamics at DNA surfaces.
- To investigate the translational mobility of water in the vicinity of DNA duplexes.
Main Methods:
- Attaching nitroxide radicals (spin labels) to DNA phosphate backbones.
- Applying a novel ODNP analysis to differentiate water populations.
- Conducting control studies with tethered DNA and altered nitroxide mobility.
Main Results:
- A significant population of water near DNA surfaces exhibits fast, bulk-like translational diffusion.
- This mobile water moves more rapidly than water near protein or membrane surfaces.
- DNA surfaces interact weakly with a substantial fraction of their hydration water network.
Conclusions:
- DNA surfaces facilitate unusually rapid water diffusion compared to other biomolecular surfaces.
- Weak interactions with surface water can lower activation barriers for DNA-mediated interactions.
- This finding offers new insights into DNA's role in biological processes.
Related Concept Videos
Aquaporins
7.0K
Aquaporins or AQPs are a family of integral membrane proteins whose primary function is to transport water, while some called aquaglyceroporins also transport glycerol. In addition, aquaporins have also been suspected to be involved in transporting volatile substances, such as carbon dioxide and ammonia, across membranes. Such AQPs that act as gas channels are often highly expressed in cells involved in the gaseous exchange, such as red blood cells, epithelial cells, and pulmonary capillaries.
7.0K
Overview of DNA Repair
35.4K
In order to be passed through generations, genomic DNA must be undamaged and error-free. However, every day, DNA in a cell undergoes several thousand to a million damaging events by natural causes and external factors. Ionizing radiation such as UV rays, free radicals produced during cellular respiration, and hydrolytic damage from metabolic reactions can alter the structure of DNA. Damages caused include single-base alteration, base dimerization, chain breaks, and cross-linkage.
Chemically...
Chemically...
35.4K
Homologous Recombination
65.7K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
65.7K
Single-Strand DNA Binding Proteins
17.2K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
17.2K

