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Updated: Apr 4, 2026

A Novel Saturation Mutagenesis Approach: Single Step Characterization of Regulatory Protein Binding Sites in RNA Using Phosphorothioates
Published on: August 21, 2018
Properties of phosphorylated thymidylate synthase
Tomasz Frączyk1, Tomasz Ruman2, Piotr Wilk1
1Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland.
Phosphorylation of thymidylate synthase (TS) impacts its activity and mRNA binding. Studies reveal phosphorylation sites vary between bacterial and mammalian cells, affecting enzyme function and translation regulation.
Area of Science:
- Biochemistry
- Molecular Biology
- Enzymology
Background:
- Thymidylate synthase (TS) is crucial for DNA synthesis.
- Endogenous and recombinant TS may undergo phosphorylation.
- Phosphorylation's functional impact on TS is not fully understood.
Purpose of the Study:
- To investigate the phosphorylation of thymidylate synthase (TS).
- To determine the functional consequences of TS phosphorylation.
- To identify specific phosphorylation sites in different cellular contexts.
Main Methods:
- Pro-Q® Diamond Phosphoprotein Gel Stain (PGS) for detecting phosphorylation.
- Recombinant expression of TS in E. coli.
- Enzyme kinetics (Vmax), mRNA binding assays, and translation repression studies.
- Mass spectrometry (ESI-MS/MS, NanoLC-MS/MS) and 31P NMR for site identification.
- Molecular dynamics simulations.
Main Results:
- Phosphorylated recombinant TS showed reduced Vmax(app) and altered mRNA binding and translation repression.
- Phosphorylation sites differed between bacterial (histidine) and mammalian (Ser10, Ser16 in resistant cells) TS.
- Mass spectrometry identified phosphohistidine, phosphoserine, and phosphothreonine residues.
- Molecular dynamics suggested phosphorylation site-dependent effects on catalytic activity.
Conclusions:
- TS phosphorylation significantly modulates enzyme activity and regulatory functions.
- Distinct phosphorylation patterns exist in bacterial versus mammalian systems.
- Further research is needed to fully elucidate TS phosphorylation site(s) and their precise roles.
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