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Updated: Apr 1, 2026

Using RNA-sequencing to Detect Novel Splice Variants Related to Drug Resistance in In Vitro Cancer Models
Published on: December 9, 2016
A splicing variant of Merlin promotes metastasis in hepatocellular carcinoma
Zai-Li Luo1,2, Shu-Qun Cheng3, Jie Shi3
1International Cooperation Laboratory on Signal Transduction, Eastern Hepatobiiary Surgery Institute/Hospital, The Second Military Medical University, 225 Changhai Road, Shanghai 200433, China.
Abstract:
Merlin, which is encoded by the tumour suppressor gene Nf2, plays a crucial role in tumorigenesis and metastasis. However, little is known about the functional importance of Merlin splicing forms. In this study, we show that Merlin is present at low levels in human hepatocellular carcinoma (HCC), particularly in metastatic tumours, where it is associated with a poor prognosis. Surprisingly, a splicing variant of Merlin that lacks exons 2, 3 and 4 ((Δ2-4)Merlin) is amplified in HCC and portal vein tumour thrombus (PVTT) specimens and in the CSQT2 cell line derived from PVTT. Our studies show that (Δ2-4)Merlin interferes with the capacity of wild-type Merlin to bind β-catenin and ERM, and it is expressed in the cytoplasm rather than at the cell surface. Furthermore, (Δ2-4)Merlin overexpression increases the expression levels of β-catenin and stemness-related genes, induces the epithelium-mesenchymal-transition phenotype promoting cell migration in vitro and the formation of lung metastasis in vivo. Our results indicate that the (Δ2-4)Merlin variant disrupts the normal function of Merlin and promotes tumour metastasis.
Insights
A Merlin splicing variant lacking exons 2-4 promotes hepatocellular carcinoma (HCC) metastasis by disrupting normal Merlin function and increasing β-catenin. This variant is amplified in metastatic HCC and portal vein tumour thrombus (PVTT).
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Merlin, encoded by the NF2 tumor suppressor gene, is vital in preventing cancer growth and spread.
- The functional roles of different Merlin splicing forms remain largely unexplored.
- Low Merlin levels in hepatocellular carcinoma (HCC) correlate with poor prognosis, especially in metastatic cases.
Purpose of the Study:
- To investigate the role of Merlin splicing variants in HCC tumorigenesis and metastasis.
- To elucidate the functional impact of a specific Merlin variant, (Δ2-4)Merlin, on HCC progression.
- To understand the molecular mechanisms by which (Δ2-4)Merlin contributes to HCC metastasis.
Main Methods:
- Analysis of Merlin and (Δ2-4)Merlin levels in HCC and portal vein tumor thrombus (PVTT) specimens.
- Cellular and molecular assays to assess the binding interactions of (Δ2-4)Merlin with β-catenin and ERM proteins.
- Investigation of (Δ2-4)Merlin's effects on β-catenin and stemness gene expression, epithelial-mesenchymal transition (EMT), cell migration, and in vivo metastasis.
Main Results:
- The (Δ2-4)Merlin splicing variant is amplified in HCC and PVTT, and in a PVTT-derived cell line (CSQT2).
- (Δ2-4)Merlin impairs wild-type Merlin's binding to β-catenin and ERM, localizing to the cytoplasm instead of the cell surface.
- Overexpression of (Δ2-4)Merlin enhances β-catenin and stemness gene expression, promotes EMT, increases cell migration, and drives lung metastasis in vivo.
Conclusions:
- The (Δ2-4)Merlin variant disrupts normal Merlin tumor-suppressive functions.
- (Δ2-4)Merlin acts as an oncogenic driver, promoting HCC cell migration and metastasis.
- Targeting the (Δ2-4)Merlin variant may offer a therapeutic strategy for advanced HCC.
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