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Updated: Mar 31, 2026

Selection-dependent and Independent Generation of CRISPR/Cas9-mediated Gene Knockouts in Mammalian Cells
Published on: June 16, 2017
How specific is CRISPR/Cas9 really?
Henriette O'Geen1, Abigail S Yu1, David J Segal1
1Genome Center, Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95616, USA.
Abstract:
The specificity of RNA-guided nucleases has gathered considerable interest as they become broadly applied to basic research and therapeutic development. Reports of the simple generation of animal models and genome engineering of cells raised questions about targeting precision. Conflicting early reports led the field to believe that CRISPR/Cas9 system was promiscuous, leading to a variety of strategies for improving specificity and increasingly sensitive methods to detect off-target events. However, other studies have suggested that CRISPR/Cas9 is a highly specific genome-editing tool. This review will focus on deciphering and interpreting these seemingly opposing claims.
Insights
CRISPR/Cas9 gene editing shows conflicting reports on its specificity. This review deciphers claims about its precision for research and therapeutic applications.
Area of Science:
- Molecular Biology
- Genetics
- Biotechnology
Background:
- RNA-guided nucleases, including CRISPR/Cas9, are vital tools in research and therapy.
- Early studies produced conflicting data regarding the precision of CRISPR/Cas9 genome editing.
- This led to the development of strategies to enhance specificity and detect off-target mutations.
Purpose of the Study:
- To review and interpret the contradictory findings on CRISPR/Cas9 system specificity.
- To clarify the precision of CRISPR/Cas9 for genome engineering applications.
Main Methods:
- Review of existing scientific literature on CRISPR/Cas9 specificity.
- Analysis of studies reporting on both off-target events and high specificity.
- Interpretation of conflicting data to resolve discrepancies.
Main Results:
- Early concerns about CRISPR/Cas9 promiscuity contrasted with later findings of high specificity.
- Various methods have been developed to assess and improve editing precision.
- The field has grappled with understanding the nuances of CRISPR/Cas9 targeting.
Conclusions:
- CRISPR/Cas9 can be a highly specific genome-editing tool when properly utilized.
- Understanding and mitigating off-target effects remain critical for safe therapeutic development.
- Further research is needed to fully elucidate the factors influencing CRISPR/Cas9 specificity.
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