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Characterization of Transcriptional Repressor Gene MSX1 Variations for Possible Associations with Congenital Heart
Fei-Feng Li1,2, Ying Han3, Shuai Shi3
1Genomics Research Center (one of the State-Province Key Laboratory of Biopharmaceutical Engineering, China), Harbin Medical University, Harbin, China.
Insights
Genetic variations in the MSX1 gene, specifically rs3821949 and rs12532, are linked to congenital heart disease (CHD) risk in Chinese Han populations. This study investigated MSX1 and MSX2 gene variations and their association with CHD.
Area of Science:
- Cardiovascular Genetics
- Developmental Biology
- Human Genetics
Background:
- Cardiac development involves complex cell interactions and gene regulation.
- The muscle segment homeobox (MSX) gene family is crucial for cardiac cell development.
- Genetic variations in MSX genes and their link to congenital heart disease (CHD) phenotypes are not well understood.
Purpose of the Study:
- To investigate potential associations between variations in the MSX1 and MSX2 genes and congenital heart disease (CHD).
Main Methods:
- Sequencing of MSX1 and MSX2 genes in 300 Chinese Han patients with CHD and 400 healthy controls.
- Statistical analysis using Chi-Square Tests and Hardy-Weinberg equilibrium testing.
Main Results:
- Six variations in MSX2 showed very low genetic heterozygosity.
- Two variations in MSX1, rs3821949 (near 5'UTR) and rs12532 (within 3'UTR), exhibited high genetic heterozygosity.
- rs3821949 and rs12532 were statistically associated with an increased risk of CHD, particularly ventricular septal defects (VSD).
Conclusions:
- Single nucleotide polymorphisms (SNPs) rs3821949 and rs12532 within the MSX1 gene are associated with congenital heart disease (CHD) in the Chinese Han population.
Background:
The human heart consists of several cell types with distinct lineage origins. Interactions between these cardiac progenitors are very important for heart formation. The muscle segment homeobox gene family plays a key role in the cell morphogenesis and growth, controlled cellular proliferation, differentiation, and apoptosis, but the relationships between the genetic abnormalities and CHD phenotypes still remain largely unknown. The aim of this work was to evaluate variations in MSX1 and MSX2 for their possible associations with CHD.
Methods:
We sequenced the MSX1 and MSX2 genes for 300 Chinese Han CHD patients and 400 normal controls and identified the variations. The statistical analyses were conducted using Chi-Square Tests as implemented in SPSS (version 19.0). The Hardy-Weinberg equilibrium test of the population was carried out using the online software OEGE.
Results:
Six variations rs4647952, rs2048152, rs4242182, rs61739543, rs111542301 and rs3087539 were identified in the MSX2 gene, but the genetic heterozygosity of those SNPs was very low. In contrast, the genetic heterozygosity of two variations rs3821949 near the 5'UTR and rs12532 within 3'UTR of the MSX1 gene was considerably high. Statistical analyses showed that rs3821949 and rs12532 were associated with the risk of CHD (specifically VSD).
Conclusions:
The SNPs rs3821949 and rs12532 in the MSX1 gene were associated with CHD in Chinese Han populations.
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