How Tolerant are Membrane Simulations with Mismatch in Area per Lipid between Leaflets?
Soohyung Park, Andrew H Beaven, Jeffery B Klauda1
1Department of Chemical and Biomolecular Engineering and the Biophysics Program, University of Maryland , College Park, Maryland 20742, United States.
Journal of Chemical Theory and Computation
|November 18, 2015
Summary
Lipid packing mismatch in bilayer simulations alters leaflet properties. Up to 5% area per lipid mismatch is generally tolerable in all-atom membrane simulations.
Area of Science:
- Biophysics
- Computational Biology
- Materials Science
Background:
- Estimating lipid numbers in complex bilayer membranes is challenging.
- Lipid packing mismatches (area per lipid) can alter leaflet lateral pressure.
Purpose of the Study:
- Investigate the impact of lipid packing mismatch on bilayer properties.
- Determine allowable mismatch thresholds for accurate membrane simulations.
Main Methods:
- Molecular dynamics simulations of lipid bilayers with varying lipid number mismatches.
- Inclusion of peptides (gramicidin A, WALP23) to assess their influence.
- Analysis of bilayer properties including order, surface tension, and curvature energetics.
Main Results:
- Simulations remained stable, but mismatch induced asymmetric lipid packing (ordered upper, less ordered lower leaflet).
- Impacts were mild up to 5-10% mismatch; saturated lipids were more sensitive than unsaturated ones.
- Bilayer energetics indicated instability with significant mismatch.
Conclusions:
- A quantitative criterion for allowable mismatch was proposed based on continuum elastic models.
- Area per lipid mismatches up to 5% are likely tolerable for typical all-atom membrane simulations (40-160 lipids/leaflet).
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