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Updated: Mar 30, 2026

Finite Element Modelling of a Cellular Electric Microenvironment
Published on: May 18, 2021
Free Energy Calculations with Reduced Potential Cutoff Radii
Stuart J Davie1, James C Reid1,2, Debra J Searles1,2,3
1Queensland Micro- and Nanotechnology Centre and School of Biomolecular and Physical Sciences, Griffith University, Brisbane, Queensland 4111, Australia.
Abstract:
The Jarzynski Equality, the Crooks Fluctuation Theorem, and the Maximum Likelihood Estimator use a nonequilibrium approach for the determination of free energy differences due to a change in the state of a system. Here, this approach is used in combination with a novel transformation algorithm to increase computational efficiency in simulations with interacting particles, without losing accuracy. The algorithm is shown to work well for a Lennard-Jones fluid undergoing a change in density over three very different density ranges, and for the systems considered the algorithm demonstrates computational savings of up to approximately 90%. The results obtained directly from the Jarzynski Equality and from the Maximum Likelihood Estimator are also compared.
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