Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Density00:56

Density

21.0K
Density is an important characteristic of substances, crucial in determining whether an object sinks or floats in a fluid. Its SI unit is kg/m3, and its cgs unit is g/cm3. The density of an object helps in identifying its composition, and also reveals information about the phase of the matter and its substructure. The densities of liquids and solids are roughly comparable, consistent with the fact that their atoms are in close contact. However, gases have much lower densities than liquids and...
21.0K
Density and Archimedes' Principle01:05

Density and Archimedes' Principle

9.2K
When a lump of clay is dropped into water, it sinks. But if the same lump of clay is molded into the shape of a boat, it starts to float. Because of its shape, the clay boat displaces more water than the lump and experiences a greater buoyant force, even though its mass is the same. The same holds true for steel ships. The average density of an object majorly determines if the object will float. If an object's average density is less than that of the surrounding fluid, it will float. The...
9.2K
Fermi Level Dynamics01:12

Fermi Level Dynamics

976
The vacuum level denotes the energy threshold required for an electron to escape from a material surface. It is usually positioned above the conduction band of a semiconductor and acts as a benchmark for comparing electron energies within various materials.
Electron affinity in semiconductors refers to the energy gap between the minimum of its conduction band and the vacuum level and it is a critical parameter in determining how easily a semiconductor can accept additional electrons.
The work...
976
Graphing the Wave Function01:13

Graphing the Wave Function

3.3K
Consider the wave equation for a sinusoidal wave moving in the positive x-direction. The wave equation is a function of both position and time. From the wave equation, two different graphs can be plotted.
3.3K
Maxwell-Boltzmann Distribution: Problem Solving01:20

Maxwell-Boltzmann Distribution: Problem Solving

3.1K
Individual molecules in a gas move in random directions, but a gas containing numerous molecules has a predictable distribution of molecular speeds, which is known as the Maxwell-Boltzmann distribution, f(v).
This distribution function f(v) is defined by saying that the expected number N (v1,v2) of particles with speeds between v1 and v2 is given by
3.1K
Debye–Huckel–Onsager Conductance Equation01:28

Debye–Huckel–Onsager Conductance Equation

189
The Debye-Hückel-Onsager equation is a cornerstone of physical chemistry, providing a method to determine the molar conductance (Λm) and molar conductance at infinite dilution (Λ°m) for uni-univalent electrolytes.Uni-univalent electrolytes are electrolytes that dissociate in solution to produce one cation with a +1 charge and one anion with a –1 charge per formula unit.This equation addresses two crucial phenomena: the asymmetry effect and the electrophoretic effect.
189

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

El Agente Cuántico: Automating quantum simulations.

Reports on progress in physics. Physical Society (Great Britain)·2026
Same author

Mapping the crystallization landscape of rare earth MOFs: a high-throughput investigation of structure, kinetics, and selectivity.

Chemical science·2026
Same author

Quantitative prediction of siRNA complexation by ionizable drugs enables their codelivery in nanoparticles.

Science advances·2026
Same author

Lessons From Drug Discovery for Cryoprotective Agent Design: An AI-Oriented Perspective.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)·2026
Same author

Photochemical post-functionalization of polystyrene enables accelerated chemical recycling.

Chemical science·2026
Same author

Adsorption Hysteresis Under Control: Tuning Host-Guest Interactions via a Genetic Algorithm.

ACS nano·2026

Related Experiment Video

Updated: Mar 29, 2026

Novel 3D/VR Interactive Environment for MD Simulations, Visualization and Analysis
11:29

Novel 3D/VR Interactive Environment for MD Simulations, Visualization and Analysis

Published on: December 18, 2014

12.4K

Real-Space Density Functional Theory on Graphical Processing Units: Computational Approach and Comparison to Gaussian

Xavier Andrade1, Alán Aspuru-Guzik1

  • 1Department of Chemistry and Chemical Biology, Harvard University , 12 Oxford Street, Cambridge, Massachusetts 02138, United States.

Journal of Chemical Theory and Computation
|November 22, 2015
PubMed
Summary

Graphical processing units (GPUs) accelerate real-space density functional theory (DFT) calculations. This new scheme in Octopus software offers significant speed-ups, making real-space DFT competitive for GPU simulations.

More Related Videos

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

13.5K
Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.8K

Related Experiment Videos

Last Updated: Mar 29, 2026

Novel 3D/VR Interactive Environment for MD Simulations, Visualization and Analysis
11:29

Novel 3D/VR Interactive Environment for MD Simulations, Visualization and Analysis

Published on: December 18, 2014

12.4K
Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics
10:52

Multiscale Sampling of a Heterogeneous Water/Metal Catalyst Interface using Density Functional Theory and Force-Field Molecular Dynamics

Published on: April 12, 2019

13.5K
Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.8K

Area of Science:

  • Computational Physics
  • Materials Science
  • Quantum Chemistry

Background:

  • Density Functional Theory (DFT) is a cornerstone for simulating material properties.
  • Real-space DFT methods offer an alternative to traditional basis set approaches.
  • Accelerating computationally intensive DFT calculations is crucial for advancing materials discovery.

Purpose of the Study:

  • To investigate the application of graphical processing units (GPUs) for accelerating real-space DFT calculations.
  • To develop and implement an efficient data parallelism scheme for real-space DFT on GPUs.
  • To evaluate the performance of the implemented scheme on current-generation GPUs.

Main Methods:

  • Developed a data parallelism scheme tailored for real-space DFT procedures.
  • Implemented the scheme within the Octopus open-source code.
  • Benchmarked performance on AMD and Nvidia GPUs, comparing against CPU implementations and GPU Gaussian basis set codes.

Main Results:

  • Achieved sustained performance of up to 90 GFlops on a single GPU.
  • Demonstrated significant speed-up compared to the CPU version of the Octopus code.
  • Showed that the real-space approach on GPUs can outperform GPU Gaussian basis set codes for certain systems.

Conclusions:

  • The developed data parallelism scheme effectively accelerates real-space DFT calculations on GPUs.
  • The Octopus code with this implementation offers a competitive and efficient platform for GPU-accelerated DFT simulations.
  • Real-space DFT on GPUs presents a viable and powerful alternative for large-scale electronic structure calculations.