Related Experiment Video
Updated: Mar 29, 2026

High Resolution 3D Imaging of Ex-Vivo Biological Samples by Micro CT
Published on: June 21, 2011
Investigation of spatial resolution characteristics of an in vivo micro computed tomography system
Muhammad U Ghani1, Zhongxing Zhou2, Liqiang Ren1
1Center for Bioengineering and School of Electrical and Computer Engineering, University of Oklahoma, Norman OK 73019, USA.
Abstract:
The spatial resolution characteristics of an in vivo micro computed tomography (CT) system was investigated in the in-plane (x-y), cross plane (z) and projection imaging modes. The micro CT system utilized in this study employs a flat panel detector with a 127 μm pixel pitch, a micro focus x-ray tube with a focal spot size ranging from 5-30 μm, and accommodates three geometric magnifications (M) of 1.72, 2.54 and 5.10. The in-plane modulation transfer function (MTF) curves were measured as a function of the number of projections, geometric magnification (M), detector binning and reconstruction magnification (MRecon). The in plane cutoff frequency (10% MTF) ranged from 2.31 lp/mm (M=1.72, 2×2 binning) to 12.56 lp/mm (M=5.10, 1×1 binning) and a bar pattern phantom validated those measurements. A slight degradation in the spatial resolution was observed when comparing the image reconstruction with 511 and 918 projections, whose effect was visible at the lower frequencies. Small value of MRecon has little or no impact on the in-plane spatial resolution owning to a stable system. Large value of MRecon has implications on the spatial resolution and it was evident when comparing the bar pattern images reconstructed with MRecon=1.25 and 2.5. The cross plane MTF curves showed that the spatial resolution increased as the slice thickness decreased. The cutoff frequencies in the projection imaging mode yielded slightly higher values as compared to the in-plane and cross plane modes at all the geometric magnifications (M). At M=5.10, the cutoff resolution of the projection and cross plane on an ultra-high contrast resolution bar chip phantom were 14.9 lp/mm and 13-13.5 lp/mm. Due to the finite focal spot size of the x-ray tube, the detector blur and the reconstruction kernel functions, the system's spatial resolution does not reach the limiting spatial resolution as defined by the Nyquist's detector criteria with an ideal point source. The geometric magnification employed in the micro CTs provide a tradeoff between field of view and spatial resolution for a wide range of applications.
Related Concept Videos
Computed Tomography
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Three-Dimensional Microscopy in Microbiology
Imaging Studies III: Computed Tomography

