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Cycloheximide Chase Analysis of Protein Degradation in Saccharomyces cerevisiae
Published on: April 18, 2016
The Toxicity of a Novel Antifungal Compound Is Modulated by Endoplasmic Reticulum-Associated Protein Degradation
Shriya Raj1, Karthik Krishnan2, David S Askew2
1Institut Pasteur, Unité des Aspergillus, Département Mycologie, Paris, France.
Abstract:
In a search for new antifungal compounds, we screened a library of 4,454 chemicals for toxicity against the human fungal pathogen Aspergillus fumigatus. We identified sr7575, a molecule that inhibits growth of the evolutionary distant fungi A. fumigatus, Cryptococcus neoformans, Candida albicans, and Saccharomyces cerevisiae but lacks acute toxicity for mammalian cells. To gain insight into the mode of inhibition, sr7575 was screened against 4,885 S. cerevisiae mutants from the systematic collection of haploid deletion strains and 977 barcoded haploid DAmP (decreased abundance by mRNA perturbation) strains in which the function of essential genes was perturbed by the introduction of a drug resistance cassette downstream of the coding sequence region. Comparisons with previously published chemogenomic screens revealed that the set of mutants conferring sensitivity to sr7575 was strikingly narrow, affecting components of the endoplasmic reticulum-associated protein degradation (ERAD) stress response and the ER membrane protein complex (EMC). ERAD-deficient mutants were hypersensitive to sr7575 in both S. cerevisiae and A. fumigatus, indicating a conserved mechanism of growth inhibition between yeast and filamentous fungi. Although the unfolded protein response (UPR) is linked to ERAD regulation, sr7575 did not trigger the UPR in A. fumigatus and UPR mutants showed no enhanced sensitivity to the compound. The data from this chemogenomic analysis demonstrate that sr7575 exerts its antifungal activity by disrupting ER protein quality control in a manner that requires ERAD intervention but bypasses the need for the canonical UPR. ER protein quality control is thus a specific vulnerability of fungal organisms that might be exploited for antifungal drug development.
Insights
A new antifungal compound, sr7575, effectively inhibits fungal growth by disrupting endoplasmic reticulum-associated protein degradation (ERAD). This discovery offers a novel strategy for developing antifungal drugs targeting fungal protein quality control mechanisms.
Area of Science:
- Mycology
- Molecular Biology
- Drug Discovery
Background:
- Antifungal drug development faces challenges due to limited targets and emerging resistance.
- Identifying novel mechanisms of fungal growth inhibition is crucial for new therapeutic strategies.
Purpose of the Study:
- To discover new antifungal compounds with novel mechanisms of action.
- To investigate the molecular targets and pathways affected by a newly identified antifungal agent, sr7575.
Main Methods:
- Chemical screening of 4,454 compounds against Aspergillus fumigatus to identify antifungal activity.
- Chemogenomic analysis using Saccharomyces cerevisiae deletion and DAmP mutant libraries to determine sr7575's mode of action.
- Comparative analysis with existing chemogenomic data to identify sensitive pathways.
Main Results:
- The compound sr7575 demonstrated broad-spectrum antifungal activity against multiple fungal species (A. fumigatus, C. neoformans, C. albicans, S. cerevisiae) with no observed mammalian cell toxicity.
- Chemogenomic screening revealed that sr7575 specifically targets the endoplasmic reticulum-associated protein degradation (ERAD) pathway and the ER membrane protein complex (EMC).
- ERAD-deficient mutants showed hypersensitivity to sr7575, confirming ERAD's role in sensitivity and indicating a conserved mechanism across fungal types.
Conclusions:
- Sr7575 exerts antifungal effects by disrupting fungal protein quality control through the ERAD pathway, independent of the unfolded protein response (UPR).
- The ERAD pathway represents a specific vulnerability in fungal organisms, presenting a promising target for the development of novel antifungal therapies.
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