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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Variations in ORAI1 Gene Associated with Kawasaki Disease
Yoshihiro Onouchi1,2, Ryuji Fukazawa3, Kenichiro Yamamura4
1Laboratory for Cardiovascular Diseases, Center for Integrative Medical Sciences, RIKEN, Yokohama, Japan.
Insights
Genetic variations in the ORAI1 gene are linked to Kawasaki disease (KD), a childhood vasculitis. This suggests the calcium/NFAT pathway plays a role in KD development.
Area of Science:
- Genetics
- Immunology
- Pediatrics
Background:
- Kawasaki disease (KD) is a systemic vasculitis affecting children with unknown causes.
- Recent research suggests the calcium/NFAT pathway may be involved in KD pathogenesis.
- The ORAI1 gene, encoding a calcium channel, is located on chromosome 12q24, a region previously linked to KD.
Purpose of the Study:
- To investigate the association between ORAI1 gene variations and Kawasaki disease.
- To explore the role of the calcium/NFAT pathway in KD etiology.
Main Methods:
- Case-control study analyzing genetic variations in ORAI1.
- Genotyping of single nucleotide polymorphism rs3741596 and insertion variant rs141919534.
- Meta-analysis of discovery and replication sample sets.
Main Results:
- A common ORAI1 polymorphism (rs3741596) showed significant association with KD in discovery, replication, and meta-analysis.
- The risk allele frequency of rs3741596 is notably higher in Japanese populations.
- A rare ORAI1 insertion variant (rs141919534) was also associated with KD.
Conclusions:
- ORAI1 gene variations are associated with Kawasaki disease.
- These findings highlight the potential importance of the calcium/NFAT pathway in KD pathogenesis.
Abstract:
Kawasaki disease (KD; MIM#61175) is a systemic vasculitis syndrome with unknown etiology which predominantly affects infants and children. Recent findings of susceptibility genes for KD suggest possible involvement of the Ca(2+)/NFAT pathway in the pathogenesis of KD. ORAI1 is a Ca(2+) release activated Ca(2+) (CRAC) channel mediating store-operated Ca(2+) entry (SOCE) on the plasma membrane. The gene for ORAI1 is located in chromosome 12q24 where a positive linkage signal was observed in our previous affected sib-pair study of KD. A common non-synonymous single nucleotide polymorphism located within exon 2 of ORAI1 (rs3741596) was significantly associated with KD (P = 0.028 in the discovery sample set (729 KD cases and 1,315 controls), P = 0.0056 in the replication sample set (1,813 KD cases vs. 1,097 controls) and P = 0.00041 in a meta-analysis by the Mantel-Haenszel method). Interestingly, frequency of the risk allele of rs3741596 is more than 20 times higher in Japanese compared to Europeans. We also found a rare 6 base-pair in-frame insertion variant associated with KD (rs141919534; 2,544 KD cases vs. 2,414 controls, P = 0.012). These data indicate that ORAI1 gene variations are associated with KD and may suggest the potential importance of the Ca(2+)/NFAT pathway in the pathogenesis of this disorder.
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