Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

pV-Diagrams01:18

pV-Diagrams

6.5K
The pV diagram, which is a graph of pressure versus volume of the gas under study, is helpful in describing certain aspects of the substance. When the substance behaves like an ideal gas, the ideal gas equation describes the relationship between its pressure and volume. On a pV diagram, it is common to plot an isotherm, which is a curve showing p as a function of V with the number of molecules and the temperature fixed. Then, for an ideal gas, the product of the pressure of the gas and its...
6.5K
Karyotyping01:17

Karyotyping

69.8K
Overview
69.8K
Karyotyping01:17

Karyotyping

11.9K
11.9K
Nucleic Acid Structure01:25

Nucleic Acid Structure

10.1K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
10.1K
Cell Diagrams and IUPAC Conventions01:21

Cell Diagrams and IUPAC Conventions

55
Electrochemical cell notation is a standardized symbolic representation that communicates the structure and reaction pathway of galvanic and electrolytic cells. This notation plays a critical role in describing redox reactions and electrochemical cell configurations without the need for detailed diagrams.In electrochemical cell notation, a single vertical line “|” denotes a phase boundary, such as between a solid electrode and an aqueous solution. A double vertical line...
55
¹H NMR: Pople Notation01:09

¹H NMR: Pople Notation

2.8K
The Pople nomenclature system classifies spin systems based on the difference between their chemical shifts. Coupled spins are denoted by capital letters with subscripts indicating the number of equivalent nuclei. When the coupled nuclei have well-separated chemical shifts, they are assigned letters that are far apart in the alphabet, such as A and X. When the difference in chemical shifts is small, coupled nuclei are named using adjacent letters of the alphabet (AB, MN, or XY).
A proton...
2.8K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Pan-cell type continuous chromatin state annotation of all epigenomes from the International Human Epigenome Consortium.

Genome biology·2026
Same author

Continuous chromatin state feature annotation of the human epigenome.

Bioinformatics (Oxford, England)·2022
Same author

SigTools: exploratory visualization for genomic signals.

Bioinformatics (Oxford, England)·2021
Same author

jViz.RNA 4.0-Visualizing pseudoknots and RNA editing employing compressed tree graphs.

PloS one·2019
Same author

Numerical integration methods and layout improvements in the context of dynamic RNA visualization.

BMC bioinformatics·2017
Same author

A permutation based simulated annealing algorithm to predict pseudoknotted RNA secondary structures.

International journal of bioinformatics research and applications·2015

Related Experiment Video

Updated: Mar 25, 2026

Visualization of DNA Repair Proteins Interaction by Immunofluorescence
07:55

Visualization of DNA Repair Proteins Interaction by Immunofluorescence

Published on: June 26, 2020

11.3K

RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots.

Boris Shabash, Kay C Wiese

    IEEE/ACM Transactions on Computational Biology and Bioinformatics
    |February 26, 2016
    PubMed
    Summary

    Visualizing RNA pseudoknots, complex structures in RNA folding, is challenging in 2D media. This review covers advancements in RNA visualization tools and classification systems over the last two decades.

    More Related Videos

    Visualization and Analysis of Pharyngeal Arch Arteries using Whole-mount Immunohistochemistry and 3D Reconstruction
    10:02

    Visualization and Analysis of Pharyngeal Arch Arteries using Whole-mount Immunohistochemistry and 3D Reconstruction

    Published on: March 31, 2020

    10.1K
    Visualization of miniSOG Tagged DNA Repair Proteins in Combination with Electron Spectroscopic Imaging ESI
    13:06

    Visualization of miniSOG Tagged DNA Repair Proteins in Combination with Electron Spectroscopic Imaging ESI

    Published on: September 24, 2015

    10.6K

    Related Experiment Videos

    Last Updated: Mar 25, 2026

    Visualization of DNA Repair Proteins Interaction by Immunofluorescence
    07:55

    Visualization of DNA Repair Proteins Interaction by Immunofluorescence

    Published on: June 26, 2020

    11.3K
    Visualization and Analysis of Pharyngeal Arch Arteries using Whole-mount Immunohistochemistry and 3D Reconstruction
    10:02

    Visualization and Analysis of Pharyngeal Arch Arteries using Whole-mount Immunohistochemistry and 3D Reconstruction

    Published on: March 31, 2020

    10.1K
    Visualization of miniSOG Tagged DNA Repair Proteins in Combination with Electron Spectroscopic Imaging ESI
    13:06

    Visualization of miniSOG Tagged DNA Repair Proteins in Combination with Electron Spectroscopic Imaging ESI

    Published on: September 24, 2015

    10.6K

    Area of Science:

    • Molecular Biology
    • Bioinformatics
    • Structural Biology

    Background:

    • RNA visualization is essential for understanding RNA structure-function relationships and improving prediction algorithms.
    • Pseudoknots, a key RNA structural motif, pose significant visualization challenges in two-dimensional media due to their complex 3D nature.

    Purpose of the Study:

    • To review advancements in RNA visualization techniques over the past two decades, focusing specifically on pseudoknots.
    • To provide a comprehensive overview of pseudoknotted RNA structures, their functional relevance, and classification systems.

    Main Methods:

    • Literature review of RNA visualization advancements in the last 20 years.
    • Analysis of theoretical frameworks for RNA structural topology classification.
    • Comparative discussion of software tools and algorithms for RNA visualization.

    Main Results:

    • Identification of key challenges in visualizing RNA pseudoknots in 2D.
    • Overview of pseudoknot structures and their functional significance.
    • Presentation and comparison of various RNA classification systems and visualization tools.

    Conclusions:

    • Significant progress has been made in RNA visualization, yet pseudoknot representation remains an active area of research.
    • Understanding RNA topology classification is crucial for developing effective visualization tools.
    • The review offers insights into the strengths and weaknesses of current RNA visualization software.