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Updated: Mar 23, 2026

Conventional BODIPY Conjugates for Live-Cell Super-Resolution Microscopy and Single-Molecule Tracking
Published on: June 8, 2020
Non-symmetric benzo[b]-fused BODIPYs as a versatile fluorophore platform reaching the NIR: a systematic study of the
André Bessette1, Thomas Auvray2, Denis Désilets3
1Département de Chimie, Université de Montréal, Pavillon J.-A. Bombardier, 5155 Decelles Avenue, Montréal, Québec H3T-2B1, Canada. garry.hanan@umontreal.ca and PCAS Canada Inc., 725 Trotter street, Saint-Jean-sur-Richelieu, Québec J3B 8J8, Canada. denis.desilets@pcascanada.com.
Abstract:
Ten newly synthesized non-symmetric benzo[b]-fused BODIPYs are compared with an extended series of nine related families (23 compounds) to gain insights into their structure-property relationship. The insertion of a fused indole moiety into the dipyrromethene core and various substituents on the proximal aryl including fused aromatic groups, lead to pronounced changes in the properties of compounds . By taking advantage of this versatile synthetic platform that allows facile substituent modifications and extension of the π-conjugated system, significant bathochromic shifts in the absorption (λmax = 511-597 nm) and emission (601-757 nm) bands are achieved. Although the oxidation potentials of the compounds vary considerably throughout the series (+1.28-+1.65 V) due to the significant contribution of the aryl function to the HOMO, the reduction remains much more consistent (-0.61 to -0.79 V) as the LUMO resides primarily on the dipyrromethene core with little aryl contribution as calculated by DFT. For example, installation of a dimethylamine substituent in the para position of the aryl group leads to drastic modification of the optoelectronic properties of the absorption (597 nm) and emission (757 nm) maxima. The full electrochemical, photophysical and computational analyses of the compounds along with the structural characterization of compounds , , , and are used to rationalize the potential of this powerful platform.
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