Related Experiment Video
Updated: Mar 23, 2026

08:58
In Vitro Transcribed RNA-based Luciferase Reporter Assay to Study Translation Regulation in Poxvirus-infected Cells
Published on: May 1, 2019
15.7K
Commandeering the Ribosome: Lessons Learned from Dicistroviruses about Translation.
1Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.
Journal of Virology
|April 8, 2016
Summary
Viruses hijack host cell ribosomes for replication using internal ribosome entry sites (IRESs). This study highlights the Dicistroviridae IRES as a key model for understanding viral translation strategies.
Area of Science:
- Molecular Biology
- Virology
- Biochemistry
Background:
- Viruses rely on host cell machinery, particularly ribosomes, for replication.
- Viral strategies to control host translation are diverse and crucial for viral propagation.
- Internal ribosome entry sites (IRESs) are RNA elements that enable cap-independent translation initiation.
Purpose of the Study:
- To examine the role and mechanism of intergenic region IRES elements from Dicistroviridae viruses.
- To establish the Dicistroviridae IRES as a model system for studying IRES-dependent translation.
- To gain fundamental insights into the process of translation.
Main Methods:
- Bioinformatic analysis of viral genomes to identify IRES elements.
- In vitro biochemical assays to study IRES-mediated translation initiation.
- Cell-based assays to assess viral replication and translation efficiency.
Main Results:
- The intergenic region IRES of Dicistroviridae viruses efficiently recruits ribosomes for translation.
- Structural and sequence features of the Dicistroviridae IRES are critical for its function.
- The Dicistroviridae IRES serves as a robust model for investigating IRES-driven translation.
Conclusions:
- Dicistroviridae IRES elements are vital for viral replication by hijacking host ribosomes.
- This IRES family provides a valuable model for fundamental research into translation mechanisms.
- Understanding IRES function can inform antiviral strategies targeting viral translation.
Related Concept Videos
Leaky Scanning
5.8K
During most eukaryotic translation processes, the small 40S ribosome subunit scans an mRNA from its 5' end until it encounters the first start AUG codon. The large 60S ribosomal subunit then joins the smaller one to initiate protein synthesis. The location of the translation initiation is largely determined by the nucleotides near the start codon as there may be multiple translation initiation sites present on the mRNA. Marilyn Kozak discovered that the sequence RCCAUGG (where R...
5.8K
Initiation of Translation
40.1K
Initiating translation is complex because it involves multiple molecules. Initiator tRNA, ribosomal subunits, and eukaryotic initiation factors (eIFs) are all required to assemble on the initiation codon of mRNA. This process consists of several steps that are mediated by different eIFs.
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
First, the initiator tRNA must be selected from the pool of elongator tRNAs by eukaryotic initiation factor 2 (eIF2). The initiator tRNA (Met-tRNAi) has conserved sequence elements including modified bases at...
40.1K
Retrovirus Life Cycles
50.5K
Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
50.5K
Viruses with RNA Genomes
1.2K
RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
1.2K
LTR Retrotransposons
20.4K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
20.4K
Size and Structure of Viral Genomes
1.0K
Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
1.0K

