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Following the Dynamics of Structural Variants in Experimentally Evolved Populations
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Stationary mutation models.

Ivar Simonsson1, Petter Mostad1

  • 1Department of Mathematical Sciences, Chalmers University of Technology and University of Gothenburg, SE-41296 Göteborg, Sweden.

Forensic Science International. Genetics
|May 28, 2016
PubMed
Summary
This summary is machine-generated.

Including untested parents in DNA relationship inference can alter probability calculations due to mutation models. This study addresses this by proposing stationary mutation models to resolve fundamental issues in genetic relationship testing.

Keywords:
DNA relationship inferenceFamiliasMutation matricesSTR markers

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Area of Science:

  • Forensic Science
  • Genetics
  • Biostatistics

Background:

  • DNA testing is crucial for relationship inference, often using software like Familias.
  • Incorporating potential mutations in DNA analysis can lead to unexpected changes in results when untested parents are included.

Purpose of the Study:

  • To investigate the cause of result variations in DNA relationship inference when untested parents are included.
  • To propose and evaluate stationary mutation models as a solution to these variations.

Main Methods:

  • Tracing the effect of untested parents to fundamental model-formulation issues.
  • Developing and presenting methods for deriving stationary mutation matrices from original mutation matrices.
  • Evaluating the properties of these derived stationary mutation models.

Main Results:

  • The inclusion of untested parents in DNA relationship inference can introduce slight, problematic changes in calculated probabilities.
  • Stationary mutation models were found to resolve these fundamental model-formulating issues.
  • Methods for obtaining stationary mutation models were presented and evaluated.

Conclusions:

  • Stationary mutation models typically resolve issues in DNA relationship inference caused by including untested parents.
  • However, for many marker types, achieving stationarity may conflict with biologically realistic mutation matrix requirements.