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Updated: Mar 20, 2026

Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing
Published on: October 15, 2019
Gut microbiota and inflammatory joint diseases
1Service de Rhumatologie, Hôpital Ambroise-Paré (AP-HP), 9, avenue Charles-de-Gaulle, 92100 Boulogne-Billancourt, France; Laboratoire d'Excellence, Université Paris Diderot, Sorbonne Paris Cité, 75013 Paris, France; INSERM U1173, UFR des Sciences de la santé Simone-Veil, Université de Versailles-Saint Quentin, 2, avenue de la source de la Bièvre, 78180 Montigny-le-Bretonneux, France.
Abstract:
In most chronic inflammatory diseases, the cause remains unknown. Chronic infection is, however, among the current hypotheses. Recent technological advances have allowed in-depth studies of the gut microflora, or microbiota, which contains a vast array of organisms, most of which cannot be cultured. Inflammatory bowel disease has been associated with distinctive changes in the gut microbiota, which persist between disease flares and may play a pathogenic role. Links have been demonstrated between the gut microbiota and joint inflammation in murine models of arthritis but have received little attention in human patients. Recent work has nevertheless demonstrated substantial alterations in the gut microbiota in patients with rheumatoid arthritis, psoriatic arthritis, or spondyloarthritis, with differences across diagnoses and studies. Interestingly, some of these alterations resemble those now firmly established in inflammatory bowel disease; examples include decreased microbial diversity and lower frequencies of bacterial groups belonging to the Firmicutes phylum known to have immunoregulatory properties. These new findings open up important new horizons both for understanding disease and for developing novel biomarkers and treatment strategies.
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