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Updated: Mar 19, 2026

Mapping the Emergent Spatial Organization of Mammalian Cells using Micropatterns and Quantitative Imaging

Mapping the Emergent Spatial Organization of Mammalian Cells using Micropatterns and Quantitative Imaging

Published on: April 30, 2019

Web-based network analysis and visualization using CellMaps.

Francisco Salavert¹, Luz García-Alonso², Rubén Sánchez²

¹Computational Genomics Department, Centro de Investigación Príncipe Felipe (CIPF), Valencia 46012, Spain Bioinformatics of Rare Diseases (BIER), CIBER de Enfermedades Raras (CIBERER), Valencia, Spain.

Bioinformatics (Oxford, England)

|June 15, 2016

Summary

This summary is machine-generated.

CellMaps is a new open-source web tool for visualizing, editing, and analyzing biological networks. It offers remote high-performance computing and easy integration into web pages via a JavaScript API.

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Area of Science:

Bioinformatics
Computational Biology
Systems Biology

Background:

Biological network analysis is crucial for understanding cellular processes.
Existing tools often lack comprehensive visualization and integration capabilities.
There is a need for accessible, web-based platforms for network exploration.

Purpose of the Study:

To introduce CellMaps, an open-source HTML5 web tool.
To provide functionalities for displaying, editing, exploring, and analyzing biological networks.
To enable metadata integration and remote high-performance computation.

Main Methods:

Development of an HTML5-based web application.
Implementation of a client-server architecture with a JavaScript client and C/Java server.
Utilization of RESTful web services for remote computations and analyses.
Provision of a JavaScript API for easy integration into web pages.

Main Results:

CellMaps enables comprehensive management of biological networks.
Remote execution of analyses on high-end servers is supported.
Seamless integration into existing web applications is facilitated through the JavaScript API.
The tool is open-source and readily available.

Conclusions:

CellMaps offers a powerful and flexible platform for biological network analysis.
Its web-based nature and API enhance accessibility and integration.
The tool supports advanced functionalities for researchers in systems biology and bioinformatics.