Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Computed Tomography01:10

Computed Tomography

9.4K
Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
9.4K
Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

3.0K
Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
3.0K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Structural alteration of neurons in schizophrenia and its relation with auditory hallucination.

European psychiatry : the journal of the Association of European Psychiatrists·2026
Same author

Autonomous Synthesis and Inverse Design of Electrochromic Polymers with High Efficiency and Accuracy.

Journal of the American Chemical Society·2025
Same author

Pyramidal soma size in the anterior cingulate cortex is small in schizophrenia and correlates with hallucination score.

Psychiatry research·2025
Same author

Nano-laminography with a transmission X-ray microscope.

Journal of synchrotron radiation·2025
Same author

Structural differences between human and mouse neurons and their implementation in generative AIs.

Scientific reports·2025
Same author

Deep learning-based spatio-temporal fusion for high-fidelity ultra-high-speed X-ray radiography.

Journal of synchrotron radiation·2025

Related Experiment Video

Updated: Mar 18, 2026

Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography
11:33

Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography

Published on: January 30, 2016

11.5K

Optimization of tomographic reconstruction workflows on geographically distributed resources.

Tekin Bicer1, Dogˇa Gürsoy2, Rajkumar Kettimuthu1

  • 1Mathematics and Computer Science Division, Argonne National Laboratory, USA.

Journal of Synchrotron Radiation
|July 1, 2016
PubMed
Summary
This summary is machine-generated.

Advanced Photon Source data analysis is accelerated using performance models and a workflow system. This enables timely processing of large datasets on distributed resources, achieving up to 3.13x speedup.

Keywords:
performance modelingscientific workflowstomography

More Related Videos

Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages
08:46

Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages

Published on: April 13, 2016

10.6K
Cryo-Electron Tomography Remote Data Collection and Subtomogram Averaging
08:55

Cryo-Electron Tomography Remote Data Collection and Subtomogram Averaging

Published on: July 12, 2022

6.0K

Related Experiment Videos

Last Updated: Mar 18, 2026

Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography
11:33

Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography

Published on: January 30, 2016

11.5K
Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages
08:46

Using Synchrotron Radiation Microtomography to Investigate Multi-scale Three-dimensional Microelectronic Packages

Published on: April 13, 2016

10.6K
Cryo-Electron Tomography Remote Data Collection and Subtomogram Averaging
08:55

Cryo-Electron Tomography Remote Data Collection and Subtomogram Averaging

Published on: July 12, 2022

6.0K

Area of Science:

  • Scientific computing
  • Data science
  • Synchrotron science

Background:

  • Technological advancements in synchrotron light sources generate unprecedented data volumes.
  • Local computational resources are often limited, leading to extended data analysis times.
  • Iterative processing methods, like tomographic reconstruction, demand high-performance computing for timely analysis.

Purpose of the Study:

  • To address time-sensitive analysis of Advanced Photon Source data on distributed resources.
  • To develop performance models for tomographic reconstruction workflows.
  • To create a system for transparent execution of these workflows on distributed infrastructure.

Main Methods:

  • Performance modeling of three key workflow stages: data transfer, job queuing, and computation.
  • Development of a workflow management system for automated, low-interaction execution.
  • Utilizing Globus for secure and efficient data transfers.

Main Results:

  • The proposed models and system enable selection of optimal distributed resources.
  • Achieved up to 3.13x speedup in workflow execution on experimented resources.
  • Model error rates ranged from 2.1% to 23.3%, with accuracy increasing for high-demand tasks.

Conclusions:

  • The developed performance models and workflow management system effectively optimize distributed resource utilization for synchrotron data analysis.
  • This approach significantly reduces data processing times for complex tasks like tomographic reconstruction.
  • The system offers a scalable solution for managing large-scale scientific workflows across geographically distributed computing and storage resources.