Limited value of whole blood Xpert(®) MTB/RIF for diagnosing tuberculosis in children
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Updated: Mar 18, 2026

Diagnosing Pulmonary Tuberculosis with the Xpert MTB/RIF Test
Published on: April 9, 2012
Christian Pohl1, Liliana K Rutaihwa1, Frederick Haraka2
1Swiss Tropical and Public Health Institute, Basel, Switzerland; University of Basel, Basel, Switzerland; Ifakara Health Institute, Bagamoyo, Tanzania.
Insights
The Xpert MTB/RIF assay showed very low sensitivity for detecting Mycobacterium tuberculosis in children's whole blood. While not ideal for general diagnosis, it may aid in identifying select cases of culture-negative tuberculosis.
Area of Science:
- Medical Diagnostics
- Infectious Diseases
- Pediatrics
Background:
- Tuberculosis remains a significant global health challenge, particularly in high-HIV settings.
- Accurate and rapid diagnostics are crucial for effective tuberculosis management in children.
- The Xpert MTB/RIF assay is a molecular test for Mycobacterium tuberculosis detection.
Purpose of the Study:
- To evaluate the diagnostic performance of the Xpert MTB/RIF assay using whole blood samples.
- To assess the assay's ability to detect Mycobacterium tuberculosis in children in tuberculosis-endemic regions with high HIV prevalence.
Main Methods:
- Prospective enrollment of 232 children with suspected tuberculosis in Tanzania and Uganda.
- Collection of respiratory specimens for microscopy and culture, and whole blood for Xpert MTB/RIF testing.
- Classification of children based on standardized case definitions and composite reference standards.
Main Results:
- The Xpert MTB/RIF assay detected Mycobacterium tuberculosis in 2.2% of whole blood samples.
- Sensitivity against culture-confirmed tuberculosis was 7.1% (95% CI, 1.3-31.5).
- Sensitivity against a composite reference standard (including probable cases) was 5.4% (95% CI, 2.1-13.1).
Conclusions:
- Whole blood Xpert MTB/RIF demonstrated very poor sensitivity for diagnosing childhood tuberculosis.
- The assay may offer a limited diagnostic advantage in specific cases of culture-negative tuberculosis.
- Further research is needed to optimize diagnostic strategies for pediatric tuberculosis.
Objectives:
We evaluated the ability of the Xpert(®) MTB/RIF assay to detect Mycobacterium tuberculosis in whole blood of children with tuberculosis in tuberculosis endemic settings with high rates of HIV infection.
Methods:
From June 2011 to September 2012 we prospectively enrolled children with symptoms or signs suggestive of tuberculosis at three research centres in Tanzania and Uganda. After clinical assessment, respiratory specimens were collected for microscopy and culture, as well as whole blood for Xpert(®) MTB/RIF. Children were classified according to standardised case definitions.
Results:
A total of 232 children were evaluated; 14 (6.0%) had culture-confirmed tuberculosis. The Xpert(®) MTB/RIF assay detected M. tuberculosis in 5/232 (2.2%) blood samples with 1 (0.4%) error reading and presumably 1 (0.4%) false-positive result. The sensitivity of the assay in children with culture-confirmed (1/14) versus no tuberculosis (1/117) was 7.1% (95% CI, 1.3-31.5). Three of the five Xpert(®) MTB/RIF positive patients had negative cultures, but were classified as probable tuberculosis cases. Assay sensitivity against a composite reference standard (culture-confirmed, highly probable or probable tuberculosis) was 5.4% (95% CI, 2.1-13.1).
Conclusion:
Whole blood Xpert(®) MTB/RIF demonstrated very poor sensitivity, although it may enhance the diagnostic yield in select cases, with culture-negative tuberculosis.
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