Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

3.0K
Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
3.0K
Predicting Molecular Geometry02:27

Predicting Molecular Geometry

46.8K
VSEPR Theory for Determination of Electron Pair Geometries
46.8K
Computed Tomography01:10

Computed Tomography

9.3K
Tomography refers to imaging by sections. Computed tomography (CT) is a non-invasive imaging technique that uses computers to analyze several cross-sectional X-rays to reveal minute details about structures in the body.
The technique was invented in the 1970s and is based on the principle that as X-rays pass through the body, they are absorbed or reflected at different levels. In the technique, a patient lies on a motorized platform while a computerized axial tomography (CAT) scanner rotates...
9.3K
Atomic Force Microscopy01:08

Atomic Force Microscopy

4.7K
Atomic force microscopy (AFM) is a type of scanning probe microscopy that can analyze topographic details of various specimens like ceramics, glass, polymers, and biological samples. AFM offers over 1000 times more resolution than the optical imaging system. Images generated from AFM are three-dimensional surface profiles, offering an advantage over the flat, two-dimensional images from other imaging techniques.
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...
4.7K
Molecular Models02:00

Molecular Models

45.2K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
45.2K
Crystallographic Point Groups01:29

Crystallographic Point Groups

40
Crystallographic point groups represent the various symmetry operations that can occur within crystals. They are unique in that at least one point will always remain unchanged during these actions. For instance, consider the triclinic system. This system, devoid of any axis or plane of symmetry, aligns with the C1 and Ci point groups.where Cᵢ is characterized solely by a center of inversion.Contrastingly, the monoclinic system introduces an element of symmetry. This system with one plane...
40

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Negative-curvature interfaces enable highly synergistic strength-ductility-toughness at 77 K.

Nature communications·2026
Same author

Exploring interface tension as a tool to control the morphology of binary organic semiconductor nanoparticles prepared by nanoprecipitation.

Nanoscale·2025
Same author

Reductive Treatment of Ga-Pt-Supported Catalytically Active Liquid Metal Solutions (SCALMS) for Propane Dehydrogenation.

ACS catalysis·2025
Same author

PyCCAPT: A Python Package for Open-Source Atom Probe Instrument Control and Data Calibration.

Microscopy research and technique·2025
Same author

Insights into heat treatments of biodegradable Mg-Y-Nd-Zr alloys in clinical settings: Unveiling roles of β' and β<sub>1</sub> nanophases and latent in vivo hydrogen evolution.

Acta biomaterialia·2024
Same author

Arrayed metal phosphide heterostructure by Fe doping for robust overall water splitting.

Journal of colloid and interface science·2024
Same journal

Efficient methods for wave propagation in electron microscopy.

Ultramicroscopy·2026
Same journal

Unsupervised deep image prior for sparse-view and limited-angle electron tomography.

Ultramicroscopy·2026
Same journal

Determination of the structure of the tertiary phase in the alloy Al<sub>10</sub>Mo<sub>10</sub>Nb<sub>10</sub>Ta<sub>10</sub>Ti<sub>30</sub>Zr<sub>30</sub> using convergent beam electron diffraction.

Ultramicroscopy·2026
Same journal

Predictive drift compensation of multi-frame STEM via live scan modification.

Ultramicroscopy·2026
Same journal

Deep PACBED: Multitask analysis of PACBED images using deep neural networks.

Ultramicroscopy·2026
Same journal

Guided progressive reconstructive imaging: A new quantization-based framework for low-dose, high-throughput and real-time analytical ptychography.

Ultramicroscopy·2026
See all related articles

Related Experiment Video

Updated: Mar 17, 2026

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.8K

A computational geometry framework for the optimisation of atom probe reconstructions.

Peter Felfer1, Julie Cairney2

  • 1Australian Centre for Microscopy and Microanalysis, The University of Sydney, NSW 2006, Australia; Institute for General Materials Properties, Department of Materials Science, Friedrich-Alexander University Erlangen-Nürnberg, 91058 Erlangen, Germany.

Ultramicroscopy
|July 25, 2016
PubMed
Summary
This summary is machine-generated.

This study introduces computational geometry methods to enhance atom probe data reconstruction at the nanoscale. These techniques improve accuracy by iteratively refining reconstructions and correcting trajectory aberrations for better material analysis.

Keywords:
Atom probe reconstructionAtom probe tomographyData analysis

More Related Videos

Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps
09:30

Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps

Published on: July 19, 2024

2.2K
Probe Type II Band Alignment in One-Dimensional Van Der Waals Heterostructures Using First-Principles Calculations
13:56

Probe Type II Band Alignment in One-Dimensional Van Der Waals Heterostructures Using First-Principles Calculations

Published on: October 12, 2019

8.4K

Related Experiment Videos

Last Updated: Mar 17, 2026

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.8K
Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps
09:30

Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps

Published on: July 19, 2024

2.2K
Probe Type II Band Alignment in One-Dimensional Van Der Waals Heterostructures Using First-Principles Calculations
13:56

Probe Type II Band Alignment in One-Dimensional Van Der Waals Heterostructures Using First-Principles Calculations

Published on: October 12, 2019

8.4K

Area of Science:

  • Materials Science
  • Computational Geometry
  • Data Analysis

Background:

  • Atom probe tomography (APT) is a powerful technique for 3D material characterization at the atomic scale.
  • Reconstruction of APT data, especially at coarser scales (>10nm), can suffer from trajectory aberrations and shape deviations.
  • Improving reconstruction accuracy is crucial for reliable nanoscale material analysis.

Purpose of the Study:

  • To present novel pathways for improving atom probe data reconstruction on a coarse scale (>10nm).
  • To introduce computational geometry-based methods for iterative refinement of APT reconstructions.
  • To address and compensate for ion trajectory aberrations and overall shape deviations in APT datasets.

Main Methods:

  • Application of computational geometry principles to APT data.
  • Iterative adjustment of reconstructions to satisfy known shape criteria.
  • Utilizing barycentric coordinate transforms for implicit approximation of reconstructions.
  • Developing a method to obtain a dataset hull in detector and reconstruction space.
  • Employing a 'master curve' for compensating ion trajectory aberrations.

Main Results:

  • Demonstrated improvement in APT reconstruction accuracy at the >10nm scale.
  • Successful compensation of trajectory aberrations using computational geometry.
  • Iterative refinement of a grain boundary dataset reconstruction.
  • Enhanced data utilization through dataset hull generation.
  • Correction of overall shape deviations in APT data.

Conclusions:

  • Computational geometry offers effective pathways for enhancing APT data reconstruction quality.
  • The presented methods improve accuracy and data utilization in nanoscale material characterization.
  • These techniques provide a robust framework for correcting aberrations and shape deviations in APT datasets.