Coordinated ubiquitination and phosphorylation of RIP1 regulates necroptotic cell death
M Cristina de Almagro1, Tatiana Goncharov1, Anita Izrael-Tomasevic2
1Department of Early Discovery Biochemistry, Genentech, 1 DNA Way, South San Francisco, CA 94080, USA.
Abstract:
Proper regulation of cell death signaling is crucial for the maintenance of homeostasis and prevention of disease. A caspase-independent regulated form of cell death called necroptosis is rapidly emerging as an important mediator of a number of human pathologies including inflammatory bowel disease and ischemia-reperfusion organ injury. Activation of necroptotic signaling through TNF signaling or organ injury leads to the activation of kinases receptor-interacting protein kinases 1 and 3 (RIP1 and RIP3) and culminates in inflammatory cell death. We found that, in addition to phosphorylation, necroptotic cell death is regulated by ubiquitination of RIP1 in the necrosome. Necroptotic RIP1 ubiquitination requires RIP1 kinase activity, but not necroptotic mediators RIP3 and MLKL (mixed lineage kinase-like). Using immunoaffinity enrichment and mass spectrometry, we profiled numerous ubiquitination events on RIP1 that are triggered during necroptotic signaling. Mutation of a necroptosis-related ubiquitination site on RIP1 reduced necroptotic cell death and RIP1 ubiquitination and phosphorylation, and disrupted the assembly of RIP1 and RIP3 in the necrosome, suggesting that necroptotic RIP1 ubiquitination is important for maintaining RIP1 kinase activity in the necrosome complex. We also observed RIP1 ubiquitination in injured kidneys consistent with a physiological role of RIP1 ubiquitination in ischemia-reperfusion disease. Taken together, these data reveal that coordinated and interdependent RIP1 phosphorylation and ubiquitination within the necroptotic complex regulate necroptotic signaling and cell death.
Insights
Necroptosis, a regulated cell death pathway, is controlled by RIP1 ubiquitination and phosphorylation within the necrosome. This dual regulation is vital for necroptotic signaling and preventing diseases like inflammatory bowel disease.
Area of Science:
- Cellular biology
- Molecular mechanisms of cell death
- Biochemistry
Background:
- Regulated cell death is critical for tissue homeostasis and disease prevention.
- Necroptosis, a caspase-independent cell death, is implicated in inflammatory bowel disease and ischemia-reperfusion injury.
- Activation of necroptosis involves RIP1 and RIP3 kinases, leading to inflammatory cell death.
Purpose of the Study:
- To investigate the role of RIP1 ubiquitination in necroptotic signaling.
- To identify ubiquitination sites on RIP1 during necroptosis.
- To understand the interplay between RIP1 phosphorylation and ubiquitination in regulating necroptosis.
Main Methods:
- Immunoaffinity enrichment coupled with mass spectrometry to profile RIP1 ubiquitination.
- Site-directed mutagenesis of RIP1 to assess the impact on necroptosis.
- Analysis of RIP1 and RIP3 complex assembly in the necrosome.
Main Results:
- Necroptotic cell death is regulated by RIP1 ubiquitination in the necrosome, in addition to phosphorylation.
- RIP1 ubiquitination requires RIP1 kinase activity but not RIP3 or MLKL.
- Mutation of a key RIP1 ubiquitination site impaired necroptosis, RIP1 ubiquitination/phosphorylation, and necrosome assembly.
- RIP1 ubiquitination was observed in injured kidneys, suggesting a physiological role in ischemia-reperfusion injury.
Conclusions:
- RIP1 ubiquitination is a crucial regulator of necroptotic signaling and cell death.
- Coordinated RIP1 phosphorylation and ubiquitination within the necrosome are essential for maintaining RIP1 kinase activity.
- These findings highlight RIP1 ubiquitination as a potential therapeutic target for necroptosis-related diseases.
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