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Updated: Mar 16, 2026

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
Published on: August 14, 2018
Evolutionary relationships within the lamioid tribe Synandreae (Lamiaceae) based on multiple low-copy nuclear loci
Tilottama Roy1, Nathan S Catlin2, Drake M G Garner3
1Department of Biological Sciences, University at Buffalo, Buffalo, NY, United States; Current affiliation: Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, United States.
This study re-examines the phylogeny of the plant tribe Synandreae using new nuclear DNA markers. Results confirm Synandreae monophyly and suggest a single New World colonization event, unlike the tribe Stachydeae.
Area of Science:
- Botany and Plant Systematics
- Molecular Phylogenetics
- Evolutionary Biology
Background:
- The Lamiaceae family's subfamily Lamioideae includes ten tribes, with Synandreae and Stachydeae being the only ones with New World members.
- Previous phylogenetic studies of Synandreae relied on plastid and nuclear ribosomal DNA, necessitating further investigation with additional markers.
Purpose of the Study:
- To re-evaluate the phylogenetic relationships within the plant tribe Synandreae.
- To investigate the evolutionary history and colonization patterns of Synandreae in the New World.
- To explore factors influencing the distribution and colonization success of Synandreae genera.
Main Methods:
- Incorporation of data from four low-copy nuclear loci: PHOT1, PHOT2, COR, and PPR.
- Phylogenetic analyses using combined chloroplast and nuclear DNA markers.
- Comparative analysis of colonization and migration patterns with related tribes.
Main Results:
- Confirmed the monophyly of tribe Synandreae and established sister relationships between Brazoria/Warnockia and Physostegia.
- Observed incongruence in the placement of Macbridea and Synandra, indicating unresolved relationships.
- Resolved a single colonization event for Synandreae in the New World during the Late Miocene/Tortonian, contrasting with Stachydeae's multiple colonization events.
Conclusions:
- The study reaffirms Synandreae's monophyly but highlights unresolved relationships within the tribe.
- Evidence points to a single, ancient colonization of the New World by Synandreae.
- Edaphic factors and polyploidy likely influenced the distribution and adaptive radiation of Synandreae, particularly the genus Physostegia.
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