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Updated: Mar 14, 2026

Chromatin Isolation by RNA Purification ChIRP
Published on: March 25, 2012
Understanding RNA-Chromatin Interactions Using Chromatin Isolation by RNA Purification (ChIRP)
1Center for Personal Dynamic Regulomes, Stanford University, 269 Campus Drive, Stanford, CA, 94305, USA.
Abstract:
ChIRP is a novel and easy-to-use technique for studying long noncoding RNA (lncRNA)-chromatin interactions. RNA and chromatin are cross-linked in vivo using formaldehyde or glutaraldehyde, and purified using biotinylated antisense oligonucleotides that hybridize to the target RNA. Co-precipitated DNA is then purified and analyzed by quantitative PCR (qPCR) or high-throughput sequencing.
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