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Updated: Mar 13, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
Zfp423 Regulates Sonic Hedgehog Signaling via Primary Cilium Function.
Chen-Jei Hong1,2,3,4, Bruce A Hamilton1,2,3,4
1Department of Cellular & Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, California, United States of America.
Zinc finger protein 423 (Zfp423) deficiency causes ciliopathy by affecting cerebellar granule cell precursors. This impacts Shh signaling and primary cilia, leading to cerebellar hypoplasia.
Area of Science:
- Developmental biology
- Genetics
- Cell biology
Background:
- Zfp423 is a transcription factor implicated in ciliopathies like Joubert syndrome.
- Its complex expression and nuclear localization present unique mechanistic questions.
- Previous studies proposed various cellular roles for Zfp423 in development.
Purpose of the Study:
- To investigate the cell-intrinsic role of Zfp423 in cerebellar granule cell precursors.
- To elucidate the molecular mechanisms by which Zfp423 loss leads to ciliopathy phenotypes.
- To determine Zfp423's position within developmental signaling pathways.
Main Methods:
- Analysis of Zfp423 expression in cerebellar granule cell precursors.
- CRISPR-Cas9 mediated knockout of Zfp423 in these cells.
- Assessment of cell proliferation, Shh pathway response, and primary cilia function.
- Gene expression analysis and Tulp3 interaction studies.
Main Results:
- Zfp423 loss in precursors reduced proliferation and Shh pathway response.
- Primary cilia showed abnormalities, including altered Smoothened and IFT88 localization.
- Zfp423 deficiency increased Tulp3 expression, a direct binding target.
- Overexpression of Tulp3 in Zfp423-deficient cells partially rescued Smoothened defects.
Conclusions:
- Zfp423 acts upstream of Shh signaling in cerebellar development.
- Zfp423 deficiency is a bona fide ciliopathy with cell-intrinsic effects on granule cell precursors.
- Altered Tulp3 expression contributes to the observed Smoothened translocation defects and cerebellar hypoplasia.
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