Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Whole genome-wide association study reveals genetic insights into leaf spot disease resistances and seed germination/dormancy in peanut.

Frontiers in plant science·2026
Same author

KhufuEnv, an auxiliary toolkit for building computational pipelines for plant and animal breeding.

BMC bioinformatics·2026
Same author

An X-linked sex determination mechanism in cannabis and hop.

Nature communications·2026
Same author

Gene Expression Patterns Regulating Peanut Reproductive Phenology.

Plant direct·2026
Same author

Genome sequencing and multi-stage, blood-feeding, and tissue-specific transcriptome atlas of the Rocky Mountain wood tick provide a critical resource for this vector.

bioRxiv : the preprint server for biology·2026
Same author

Aerial imagery and Segment Anything Model for architectural trait phenotyping to support genetic analysis in peanut breeding.

Plant phenomics (Washington, D.C.)·2026

Related Experiment Video

Updated: Mar 13, 2026

Translating Ribosome Affinity Purification TRAP to Investigate Arabidopsis thaliana Root Development at a Cell Type-Specific Scale
09:41

Translating Ribosome Affinity Purification TRAP to Investigate Arabidopsis thaliana Root Development at a Cell Type-Specific Scale

Published on: May 14, 2020

13.1K

A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea.

Josh Clevenger1, Ye Chu1, Brian Scheffler2

  • 1Institute of Plant Breeding, Genetics, and Genomics, University of Georgia Tifton, GA, USA.

Frontiers in Plant Science
|October 18, 2016
PubMed
Summary
This summary is machine-generated.

A new gene atlas for cultivated peanut (Arachis hypogaea) was created using genome sequences. This resource aids gene discovery and understanding of peanut development and homeolog expression bias.

Keywords:
Arachis hypogaeaPRJNA291488alternative splicingdevelopmental co-expression networkshomeolog expression biasnon-coding RNAtranscriptomics

More Related Videos

Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
07:18

Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling

Published on: May 21, 2020

8.0K
Efficient and Rapid Isolation of Early-stage Embryos from Arabidopsis thaliana Seeds
08:05

Efficient and Rapid Isolation of Early-stage Embryos from Arabidopsis thaliana Seeds

Published on: June 7, 2013

18.4K

Related Experiment Videos

Last Updated: Mar 13, 2026

Translating Ribosome Affinity Purification TRAP to Investigate Arabidopsis thaliana Root Development at a Cell Type-Specific Scale
09:41

Translating Ribosome Affinity Purification TRAP to Investigate Arabidopsis thaliana Root Development at a Cell Type-Specific Scale

Published on: May 14, 2020

13.1K
Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
07:18

Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling

Published on: May 21, 2020

8.0K
Efficient and Rapid Isolation of Early-stage Embryos from Arabidopsis thaliana Seeds
08:05

Efficient and Rapid Isolation of Early-stage Embryos from Arabidopsis thaliana Seeds

Published on: June 7, 2013

18.4K

Area of Science:

  • Genomics
  • Plant Biology
  • Transcriptomics

Background:

  • Genome sequences of Arachis duranensis and Arachis ipaensis are now available.
  • Cultivated peanut (Arachis hypogaea) genomics requires comprehensive gene atlases for research.

Purpose of the Study:

  • To create a gene atlas for cultivated peanut (Arachis hypogaea).
  • To develop tools for gene discovery and understand gene expression.
  • To analyze homeolog expression bias and identify novel RNA elements.

Main Methods:

  • Sequencing of 22 tissue types and ontogenies representing full peanut development.
  • Genome-guided assembly pipeline for homeolog-specific transcriptome assembly.
  • Annotation of developmental co-expression networks and identification of alternative splicing and non-coding RNAs.

Main Results:

  • A validated homeolog-specific transcriptome assembly for Arachis hypogaea was generated.
  • 21 developmental co-expression networks were annotated, facilitating gene discovery.
  • Homeolog expression bias was documented, showing tissue-specific differences.
  • Over 9000 alternative splicing events and 6000 non-coding RNAs were identified.

Conclusions:

  • This study provides a significant new genomic resource for cultivated peanut.
  • The gene atlas and associated data will be integrated into peanutbase.org.
  • The findings offer valuable insights into peanut gene regulation and development.