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Genetic Manipulation in Δku80 Strains for Functional Genomic Analysis of Toxoplasma gondii
Published on: July 12, 2013
Cdk7 mediates RPB1-driven mRNA synthesis in Toxoplasma gondii
Abhijit S Deshmukh1, Pallabi Mitra2, Mulaka Maruthi3
1National Institute of Animal Biotechnology, Hyderabad, India.
Abstract:
Cyclin-dependent kinase 7 in conjunction with CyclinH and Mat1 activates cell cycle CDKs and is a part of the general transcription factor TFIIH. Role of Cdk7 is well characterized in model eukaryotes however its relevance in protozoan parasites has not been investigated. This important regulator of key processes warrants closer examination particularly in this parasite given its unique cell cycle progression and flexible mode of replication. We report functional characterization of TgCdk7 and its partners TgCyclinH and TgMat1. Recombinant Cdk7 displays kinase activity upon binding its cyclin partner and this activity is further enhanced in presence of Mat1. The activated kinase phosphorylates C-terminal domain of TgRPB1 suggesting its role in parasite transcription. Therefore, the function of Cdk7 in CTD phosphorylation and RPB1 mediated transcription was investigated using Cdk7 inhibitor. Unphosphorylated CTD binds promoter DNA while phosphorylation by Cdk7 triggers its dissociation from DNA with implications for transcription initiation. Inhibition of Cdk7 in the parasite led to strong reduction in Serine 5 phosphorylation of TgRPB1-CTD at the promoters of constitutively expressed actin1 and sag1 genes with concomitant reduction of both nascent RNA synthesis and 5'-capped transcripts. Therefore, we provide compelling evidence for crucial role of TgCdk7 kinase activity in mRNA synthesis.
Insights
Cyclin-dependent kinase 7 (Cdk7) is crucial for mRNA synthesis in protozoan parasites. Inhibiting Cdk7 reduces RNA production by affecting transcription factor phosphorylation and DNA binding.
Area of Science:
- Molecular Parasitology
- Biochemistry
- Gene Regulation
Background:
- Cyclin-dependent kinase 7 (Cdk7) is a key regulator of cell cycle and transcription in eukaryotes.
- Its role in protozoan parasites, with unique cell cycles, remains largely unexplored.
Purpose of the Study:
- To functionally characterize Cyclin-dependent kinase 7 (TgCdk7) and its partners (TgCyclinH, TgMat1) in protozoan parasites.
- To investigate the role of TgCdk7 in transcription initiation and mRNA synthesis.
Main Methods:
- Recombinant expression and in vitro kinase assays of TgCdk7, TgCyclinH, and TgMat1.
- Inhibition of TgCdk7 using a specific inhibitor in the parasite.
- Analysis of TgRPB1 C-terminal domain (CTD) phosphorylation, DNA binding, nascent RNA synthesis, and 5'-capped transcripts.
Main Results:
- Recombinant TgCdk7, TgCyclinH, and TgMat1 exhibit enhanced kinase activity.
- TgCdk7 phosphorylates the TgRPB1-CTD, influencing its DNA binding.
- Cdk7 inhibition significantly reduced Serine 5 phosphorylation of TgRPB1-CTD, nascent RNA, and 5'-capped transcripts.
Conclusions:
- TgCdk7 kinase activity is essential for mRNA synthesis in protozoan parasites.
- TgCdk7 plays a critical role in transcription initiation through CTD phosphorylation and regulation of DNA binding.
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