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Updated: Mar 13, 2026

Analysis of Human T Cell Activity in an Allogeneic Co-Culture Setting of Pre-Treated Tumor Cells
Published on: March 7, 2025
The head and neck cancer immune landscape and its immunotherapeutic implications
Rajarsi Mandal1,2,3, Yasin Şenbabaoğlu4, Alexis Desrichard1,3
1Human Oncology and Pathogenesis Program.
Abstract:
Recent clinical trials have demonstrated a clear survival advantage in advanced head and neck squamous cell carcinoma (HNSCC) patients treated with immune checkpoint blockade. These emerging results reveal that HNSCC is one of the most promising frontiers for immunotherapy research. However, further progress in head and neck immuno-oncology will require a detailed understanding of the immune infiltrative landscape found in these tumors. We leveraged transcriptome data from 280 tumors profiled by The Cancer Genome Atlas (TCGA) to comprehensively characterize the immune landscape of HNSCC in order to develop a rationale for immunotherapeutic strategies in HNSCC and guide clinical investigation. We find that both HPV+ and HPV- HNSCC tumors are among the most highly immune-infiltrated cancer types. Strikingly, HNSCC had the highest median Treg/CD8+ T cell ratio and the highest levels of CD56dim NK cell infiltration, in our pan-cancer analysis of the most immune-infiltrated tumors. CD8+ T cell infiltration and CD56dim NK cell infiltration each correlated with superior survival in HNSCC. Tumors harboring genetic smoking signatures had lower immune infiltration and were associated with poorer survival, suggesting these patients may benefit from immune agonist therapy. These findings illuminate the immune landscape of HPV+ and HPV- HNSCC. Additionally, this landscape provides a potentially novel rationale for investigation of agents targeting modulators of Tregs (e.g., CTLA-4, GITR, ICOS, IDO, and VEGFA) and NK cells (e.g., KIR, TIGIT, and 4-1BB) as adjuncts to anti-PD-1 in the treatment of advanced HNSCC.
Insights
Head and neck squamous cell carcinoma (HNSCC) shows high immune infiltration. CD8+ T cells and NK cells correlate with better survival, suggesting new immunotherapy targets for advanced HNSCC patients.
Area of Science:
- Oncology
- Immunology
- Genomics
Background:
- Head and neck squamous cell carcinoma (HNSCC) is a promising area for immunotherapy.
- Understanding the tumor immune microenvironment is crucial for advancing HNSCC treatment.
Purpose of the Study:
- To comprehensively characterize the immune landscape of HNSCC using TCGA data.
- To identify potential immunotherapeutic strategies for HNSCC based on immune infiltration patterns.
Main Methods:
- Analysis of transcriptome data from 280 HNSCC tumors via The Cancer Genome Atlas (TCGA).
- Pan-cancer analysis to compare HNSCC immune infiltration with other cancer types.
Main Results:
- HNSCC exhibits high immune infiltration in both HPV-positive and HPV-negative tumors.
- HNSCC shows the highest Treg/CD8+ T cell ratio and CD56dim NK cell infiltration.
- CD8+ T cell and CD56dim NK cell infiltration correlate with improved survival.
- Tumors with smoking signatures have lower immune infiltration and poorer survival.
Conclusions:
- The immune landscape of HNSCC provides rationale for novel immunotherapeutic approaches.
- Targeting Treg modulators and NK cells alongside anti-PD-1 may benefit advanced HNSCC patients.
- Immune agonist therapy could be beneficial for patients with genetic smoking signatures.
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