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Updated: Mar 13, 2026

Examination of Proteins Bound to Nascent DNA in Mammalian Cells Using BrdU-ChIP-Slot-Western Technique
Published on: January 14, 2016
Autophagy substrate SQSTM1/p62 regulates chromatin ubiquitination during the DNA damage response
Yanan Wang1, Wei-Guo Zhu1,2,3, Ying Zhao1
1a Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function , Department of Biochemistry and Molecular Biology , School of Basic Medical Sciences, Peking University Health Science Center , Beijing , China.
Abstract:
The importance of autophagy in the DNA damage repair process is clear; however, the detailed molecular mechanism is still largely unknown. Here we found that DNA damage-induced histone H2A ubiquitination is suppressed in autophagy-deficient cells in a SQSTM1/p62 dependent manner. SQSTM1 binds and inhibits E3 ligase RNF168s activity, which is essential for H2A ubiquitination. As a result, several important factors for DNA repair cannot be recruited to the sites of DNA double-strand breaks (DSBs) in autophagy-deficient cells, leading to diminished DNA repair and increased sensitivity of cells to radiation.
Insights
Autophagy deficiency impairs DNA repair by preventing histone ubiquitination via SQSTM1/p62, increasing radiation sensitivity. This reveals a novel role for autophagy in maintaining genomic stability.
Area of Science:
- Molecular Biology
- Cellular Biology
- Genetics
Background:
- Autophagy is crucial for DNA damage repair, but its precise molecular mechanisms remain unclear.
- Histone ubiquitination is a key event in DNA damage response pathways.
Purpose of the Study:
- To elucidate the molecular mechanism linking autophagy to DNA damage repair.
- To investigate the role of SQSTM1/p62 in regulating histone ubiquitination during DNA damage response.
Main Methods:
- Cellular assays to assess DNA damage repair efficiency in autophagy-deficient cells.
- Immunoblotting and immunoprecipitation to analyze histone H2A ubiquitination and SQSTM1/p62 interactions.
- Assessment of DNA double-strand break (DSB) repair factor recruitment.
Main Results:
- DNA damage-induced histone H2A ubiquitination is significantly suppressed in autophagy-deficient cells.
- SQSTM1/p62 directly binds to and inhibits the E3 ligase RNF168, which is essential for H2A ubiquitination.
- Autophagy deficiency leads to impaired recruitment of DNA repair factors to DSBs, resulting in reduced repair and increased sensitivity to radiation.
Conclusions:
- SQSTM1/p62-mediated inhibition of RNF168 is a critical mechanism by which autophagy influences DNA repair.
- Autophagy plays a vital role in maintaining genomic stability through the regulation of histone ubiquitination and DNA repair factor recruitment.
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