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Cancers Originate from Somatic Mutations in a Single Cell02:21

Cancers Originate from Somatic Mutations in a Single Cell

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Cancer arises from mutations in the critical genes that allow healthy cells to escape cell cycle regulation and acquire the ability to proliferate indefinitely. Though originating from a single mutation event in one of the originator cells, cancer progresses when the mutant cell lines continue to gain more and more mutations, and finally, become malignant. For example, chronic myelogenous leukemia (CML) develops initially as a non-lethal increase in white blood cells, which progressively...
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Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3...
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Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
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Genes usually encode proteins necessary for the proper functioning of a healthy cell. Mutations can often cause changes to the gene expression pattern, thereby altering the phenotype.
When the function of certain critical genes, especially those involved in cell cycle regulation and cell growth signaling cascades, gets disrupted, it upsets the cell cycle progression. Such cells with unchecked cell cycles start proliferating uncontrollably and eventually develop into tumors.
Such genes that act...
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Somatic cancer variant curation and harmonization through consensus minimum variant level data.

Deborah I Ritter1, Sameek Roychowdhury2, Angshumoy Roy1

  • 1Baylor College of Medicine and Texas Children's Hospital, Houston, TX, USA.

Genome Medicine
|November 6, 2016
PubMed
Summary
This summary is machine-generated.

The Somatic Working Group developed minimal variant level data (MVLD) to standardize cancer variant curation for personalized oncology. This framework streamlines interpretation and reduces redundancy in clinical practice.

Area of Science:

  • Oncology
  • Genomics
  • Bioinformatics

Background:

  • Personalized medicine in oncology requires accurate cataloging of cancer sequence variants for clinical relevance.
Keywords:
Cancer genomicsData standardSomatic variant curationSomatic variant interpretation

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  • The Clinical Genome Resource (ClinGen) Somatic Working Group (WG) addresses this need.
  • Standardization is crucial for interpreting cancer variants in clinical settings.