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Obtaining High-Quality Transcriptome Data from Cereal Seeds by a Modified Method for Gene Expression Profiling
Published on: May 21, 2020
Drift Barriers to Quality Control When Genes Are Expressed at Different Levels
Kun Xiong1, Jay P McEntee2, David J Porfirio3
1Department of Molecular and Cellular Biology, University of Arizona, Tucson, Arizona 85721.
Gene expression errors can be managed by reducing error rates or minimizing toxic products. This study reveals a gradual transition in solutions based on population size, impacting transcriptional error rates.
Area of Science:
- Molecular Biology
- Evolutionary Biology
- Genetics
Background:
- Gene expression is inherently imperfect, occasionally producing toxic products.
- Organisms employ two main strategies to mitigate these errors: global error rate reduction or local tolerance of errors.
- Previous models suggested large populations favor local tolerance, small populations favor global reduction, and intermediate populations exhibit bistability.
Purpose of the Study:
- To investigate how variations in gene expression levels and product vulnerability affect the evolution of error management strategies.
- To re-evaluate the population size-dependent dichotomy of error management solutions.
- To explain observed non-monotonic relationships between population size and transcriptional error rates.
Main Methods:
- Theoretical modeling of selection and genetic drift acting on gene expression error management.
- Analysis of the 'drift barrier' concept, which limits the efficacy of selection against deleterious mutations.
- Incorporation of locus-specific factors like expression level and product sensitivity to errors.
Main Results:
- The strict dichotomy between global and local solutions breaks down.
- A gradual transition in evolved strategies is observed as a function of population size.
- In very small populations, even global error reduction may fail, leading to increased transcriptional error rates.
Conclusions:
- Population size, gene expression levels, and product vulnerability interact to shape the evolution of gene expression error management.
- The findings reconcile theoretical predictions with experimental observations of non-monotonic relationships between population size and transcriptional error rates in various organisms.
- Understanding these evolutionary dynamics is crucial for comprehending cellular robustness and adaptation.
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