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Published on: July 17, 2019
RasIns: Genetically Encoded Intrabodies of Activated Ras Proteins
Mehmet Cetin1, William E Evenson2, Garrett G Gross1
1Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.
Abstract:
K- and H-Ras are the most commonly mutated genes in human tumors and are critical for conferring and maintaining the oncogenic phenotype in tumors with poor prognoses. Here, we design genetically encoded antibody-like ligands (intrabodies) that recognize active, GTP-bound K- and H-Ras. These ligands, which use the 10th domain of human fibronectin as their scaffold, are stable inside the cells and when fused with a fluorescent protein label, the constitutively active G12V mutant H-Ras. Primary selection of ligands against Ras with mRNA display resulted in an intrabody (termed RasIn1) that binds with a KD of 2.1μM to H-Ras(G12V) (GTP), excellent state selectivity, and remarkable specificity for K- and H-Ras. RasIn1 recognizes residues in the Switch I region of Ras, similar to Raf-RBD, and competes with Raf-RBD for binding. An affinity maturation selection based on RasIn1 resulted in RasIn2, which binds with a KD of 120nM and also retains excellent state selectivity. Both of these intrabodies colocalize with H-Ras, K-Ras, and G12V mutants inside the cells, providing new potential tools to monitor and modulate Ras-mediated signaling. Finally, RasIn1 and Rasin2 both display selectivity for the G12V mutants as compared with wild-type Ras providing a potential route for mutant selective recognition of Ras.
Insights
Researchers developed novel antibody-like intrabodies targeting active, GTP-bound K-Ras and H-Ras. These intrabodies show high specificity and selectivity for oncogenic Ras mutants, offering potential tools for cancer research.
Area of Science:
- Oncology
- Molecular Biology
- Biotechnology
Background:
- K-Ras and H-Ras are frequently mutated in human cancers, driving tumor growth and poor prognoses.
- Targeting oncogenic Ras proteins is a significant challenge in cancer therapy.
Purpose of the Study:
- To design and develop genetically encoded antibody-like ligands (intrabodies) that specifically recognize active, GTP-bound K-Ras and H-Ras.
- To create tools for monitoring and potentially modulating Ras-mediated signaling pathways.
Main Methods:
- Utilized mRNA display for primary selection of intrabodies against Ras.
- Employed affinity maturation to enhance intrabody binding affinity and selectivity.
- Fused intrabodies with fluorescent proteins for cellular localization studies.
Main Results:
- Developed RasIn1, an intrabody with micromolar affinity (KD = 2.1μM) for H-Ras(G12V)-GTP, demonstrating high state selectivity and specificity for K- and H-Ras.
- Generated RasIn2 through affinity maturation, achieving nanomolar affinity (KD = 120nM) while maintaining selectivity.
- Observed colocalization of both intrabodies with Ras proteins and their mutants within cells.
- Demonstrated mutant-selective recognition of G12V Ras mutants over wild-type Ras.
Conclusions:
- Engineered intrabodies (RasIn1 and RasIn2) effectively bind active, GTP-bound K- and H-Ras, including oncogenic mutants.
- These intrabodies exhibit high specificity and selectivity, with potential for mutant-specific targeting.
- The developed intrabodies serve as promising tools for investigating and potentially interfering with Ras signaling in cancer.
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