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Spontaneous and Induced Mutations01:30

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Spontaneous mutations arise infrequently during DNA replication due to errors in the process. A key factor behind these errors is tautomeric shifts in nitrogenous bases, where bases transition from keto to enol forms or amino to imino forms. This shift can alter base-pairing rules, leading to mutations. Additionally, reactive oxygen species (ROS) arising from aerobic metabolism can damage DNA, resulting in depurination (loss of a purine base) or depyrimidination (loss of a pyrimidine base).
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Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
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In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
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In response to DNA damage, cells can pause the cell cycle to assess and repair the breaks. However, the cell must check the DNA at certain critical stages during the cell cycle. If the cell cycle pauses before DNA replication, the cells will contain twice the amount of DNA. On the other hand, if cells arrest after DNA replication but before mitosis, they will contain four times the normal amount of DNA. With a host of specialized proteins at their disposal,cells must use the right protein at...
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Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
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Self-assembly of Complex Two-dimensional Shapes from Single-stranded DNA Tiles
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Programmable disorder in random DNA tilings.

Grigory Tikhomirov1, Philip Petersen2, Lulu Qian1,3

  • 1Department of Bioengineering, California Institute of Technology, Pasadena, California 91125, USA.

Nature Nanotechnology
|November 29, 2016
PubMed
Summary
This summary is machine-generated.

This study introduces a framework for programming random DNA tilings, enabling controlled fabrication of complex 2D molecular networks. Researchers demonstrated precise control over network properties using simple rules for applications in molecular devices.

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Area of Science:

  • Synthetic Biology
  • Nanotechnology
  • Materials Science

Background:

  • Scaling molecular complexity requires controlled exploitation of inherent stochasticity.
  • Current methods for generating molecular structures have limitations in complexity and diversity.

Purpose of the Study:

  • To develop a framework for programming random DNA tilings.
  • To demonstrate control over global patterns in 2D molecular networks using local rules.

Main Methods:

  • Construction of planar networks (loops, mazes, trees) on DNA origami arrays.
  • Utilizing self-assembled DNA origami at microscale with nanoscale resolution.
  • Employing simple molecular building blocks and robust experimental conditions.

Main Results:

  • Demonstrated control over branching rules, growth directions, and network proximity.
  • Achieved control over the size distribution of random networks.
  • Successfully created diverse 2D molecular networks with programmable properties.

Conclusions:

  • The developed framework extends combinatorial principles to 2D molecular networks.
  • This approach offers new opportunities for fabricating complex molecular devices organized by DNA nanostructures.
  • Enables precise engineering of molecular architectures for advanced applications.