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Towards an open grapevine information system.

A-F Adam-Blondon1, M Alaux1, C Pommier1

  • 1URGI, UR1164 INRA, Université Paris-Saclay , Versailles 78026, France.

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Summary
This summary is machine-generated.

Grapevine research requires better data sharing. The new GrapeIS system will integrate global grapevine data, linking genotypes to phenotypes and research to practical applications for improved grape varieties.

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Area of Science:

  • Genomics
  • Agricultural Science
  • Bioinformatics

Background:

  • Viticulture faces significant challenges requiring coordinated research.
  • Modern biological research generates large, diverse datasets, but data findability, accessibility, interoperability, and reusability (FAIR principles) are often lacking in grapevine research.
  • Existing data systems are heterogeneous and distributed globally.

Approach:

  • An open working group, within the International Grapevine Genome Program, was formed to create a federated information system for grapevine data.
  • The system, named GrapeIS, aims to integrate disparate global data sources.
  • It will provide advanced interfaces for data modeling, semantic integration, and data mining.

Key Points:

  • Developing and adopting data annotation and formatting standards is crucial for GrapeIS.
  • GrapeIS will link genetic information (genotypes) with observable traits (phenotypes).
  • The system connects scientific research with agronomic and oenological data.

Conclusions:

  • GrapeIS is expected to yield new insights into grape biology.
  • This integrated system will facilitate the development of new grapevine varieties.
  • The goal is to address challenges like biotic/abiotic stress, climate change, and consumer demands.