Genesis and Dissemination of Highly Pathogenic H5N6 Avian Influenza Viruses
Lei Yang1, Wenfei Zhu1, Xiaodan Li1
1National Institute for Viral Disease Control and Prevention, Collaboration Innovation Center for Diagnosis and Treatment of Infectious Diseases, Chinese Center for Disease Control and Prevention, and Key Laboratory for Medical Virology, National Health and Family Planning Commission, Beijing, People's Republic of China.
Abstract:
Clade 2.3.4.4 highly pathogenic avian influenza viruses (H5Nx) have spread from Asia to other parts of the world. Since 2014, human infections with clade 2.3.4.4 highly pathogenic avian influenza H5N6 viruses have been continuously reported in China. To investigate the genesis of the virus, we analyzed 123 H5 or N6 environmental viruses sampled from live-poultry markets or farms from 2012 to 2015 in Mainland China. Our results indicated that clade 2.3.4.4 H5N2/N6/N8 viruses shared the same hemagglutinin gene as originated in early 2009. From 2012 to 2015, the genesis of highly pathogenic avian influenza H5N6 viruses occurred via two independent pathways. Three major reassortant H5N6 viruses (reassortants A, B, and C) were generated. Internal genes of reassortant A and B viruses and reassortant C viruses derived from clade 2.3.2.1c H5N1 and H9N2 viruses, respectively. Many mammalian adaption mutations and antigenic variations were detected among the three reassortant viruses. Considering their wide circulation and dynamic reassortment in poultry, we highly recommend close monitoring of the viruses in poultry and humans. IMPORTANCE Since 2014, clade 2.3.4.4 highly pathogenic avian influenza (H5Nx) viruses have caused many outbreaks in both wild and domestic birds globally. Severe human cases with novel H5N6 viruses in this group were also reported in China in 2014 and 2015. To investigate the genesis of the genetic diversity of these H5N6 viruses, we sequenced 123 H5 or N6 environmental viruses sampled from 2012 to 2015 in China. Sequence analysis indicated that three major reassortants of these H5N6 viruses had been generated by two independent evolutionary pathways. The H5N6 reassortant viruses had been detected in most provinces of southern China and neighboring countries. Considering the mammalian adaption mutations and antigenic variation detected, the spread of these viruses should be monitored carefully due to their pandemic potential.
Insights
Highly pathogenic avian influenza H5N6 viruses in China evolved through two pathways, generating three reassortants. These viruses show mammalian adaptation and antigenic variation, necessitating close monitoring for pandemic potential.
Area of Science:
- Virology
- Epidemiology
- Public Health
Background:
- Clade 2.3.4.4 highly pathogenic avian influenza (H5Nx) viruses have globally spread from Asia.
- Human infections with H5N6 viruses have been reported in China since 2014.
- The genetic diversity and origins of these viruses require investigation.
Purpose of the Study:
- To investigate the genesis and evolutionary pathways of H5N6 avian influenza viruses in China.
- To analyze genetic characteristics, including reassortment and mutations, of environmental H5 or N6 viruses.
Main Methods:
- Analysis of 123 H5 or N6 environmental viruses sampled from live-poultry markets and farms in Mainland China (2012–2015).
- Sequence analysis to determine viral origins, reassortment events, and genetic mutations.
Main Results:
- Clade 2.3.4.4 H5N2/N6/N8 viruses share a common hemagglutinin gene originating in early 2009.
- Two independent pathways led to the genesis of H5N6 viruses between 2012 and 2015, generating three major reassortants (A, B, and C).
- Reassortants A and B viruses derived internal genes from clade 2.3.2.1c H5N1, while reassortant C viruses derived them from H9N2 viruses. Mammalian adaptation mutations and antigenic variations were detected.
Conclusions:
- The dynamic reassortment and circulation of H5N6 viruses in poultry pose a significant public health concern.
- Detected mutations suggest potential for mammalian adaptation and antigenic variation, increasing pandemic potential.
- Close monitoring of these viruses in both poultry and human populations is highly recommended.
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