Related Experiment Video
Updated: Mar 9, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
DNA polymerase kappa protects human cells against MMC-induced genotoxicity through error-free translesion DNA
Yuki Kanemaru1, Tetsuya Suzuki2, Akira Sassa3
1Division of Genetics and Mutagenesis, National Institute of Health Sciences, 1-18-1 Kamiyoga, Setagaya-ku, Tokyo, 158-8501 Japan ; Division of Toxicology, Department of Pharmacology, Toxicology and Therapeutics, Showa University School of Pharmacy, 1-5-8 Hatanodai, Shinagawa-ku, Tokyo, 142-0064 Japan.
Background:
Interactions between genes and environment are critical factors for causing cancer in humans. The genotoxicity of environmental chemicals can be enhanced via the modulation of susceptible genes in host human cells. DNA polymerase kappa (Pol κ) is a specialized DNA polymerase that plays an important role in DNA damage tolerance through translesion DNA synthesis. To better understand the protective roles of Pol κ, we previously engineered two human cell lines either deficient in expression of Pol κ (KO) or expressing catalytically dead Pol κ (CD) in Nalm-6-MSH+ cells and examined cytotoxic sensitivity against various genotoxins. In this study, we set up several genotoxicity assays with cell lines possessing altered Pol κ activities and investigated the protective roles of Pol κ in terms of genotoxicity induced by mitomycin C (MMC), a therapeutic agent that induces bulky DNA adducts and crosslinks in DNA.
Results:
We introduced a frameshift mutation in one allele of the thymidine kinase (TK) gene of the KO, CD, and wild-type Pol κ cells (WT), thereby establishing cell lines for the TK gene mutation assay, namely TK+/- cells. In addition, we formulated experimental conditions to conduct chromosome aberration (CA) and sister chromatid exchange (SCE) assays with cells. By using the WT TK+/- and KO TK+/- cells, we assayed genotoxicity of MMC. In the TK gene mutation assay, the cytotoxic and mutagenic sensitivities of KO TK+/- cells were higher than those of WT TK+/- cells. MMC induced loss of heterozygosity (LOH), base pair substitutions at CpG sites and tandem mutations at GpG sites in both cell lines. However, the frequencies of LOH and base substitutions at CpG sites were significantly higher in KO TK+/- cells than in WT TK+/- cells. MMC also induced CA and SCE in both cell lines. The KO TK+/- cells displayed higher sensitivity than that displayed by WT TK+/- cells in the SCE assay.
Conclusions:
These results suggest that Pol κ is a modulating factor for the genotoxicity of MMC and also that the established cell lines are useful for evaluating the genotoxicity of chemicals from multiple endpoints in different genetic backgrounds of Pol κ.
Insights
DNA polymerase kappa (Pol κ) protects against genotoxicity from mitomycin C (MMC). Cells lacking Pol κ showed increased sensitivity to MMC-induced mutations and DNA damage, highlighting Pol κ's protective role.
Area of Science:
- Molecular Biology
- Genetics
- Toxicology
Background:
- Gene-environment interactions are key drivers of human cancer.
- Environmental chemicals can increase genotoxicity by altering host cell gene expression.
- DNA polymerase kappa (Pol κ) is crucial for DNA damage tolerance via translesion synthesis.
Purpose of the Study:
- To investigate the protective role of Pol κ against genotoxicity induced by mitomycin C (MMC).
- To evaluate cell lines with altered Pol κ activity in various genotoxicity assays.
Main Methods:
- Engineered human cell lines deficient (KO) or catalytically dead (CD) in Pol κ expression.
- Established thymidine kinase (TK+/-) cell lines for mutation assays.
- Conducted chromosome aberration (CA) and sister chromatid exchange (SCE) assays.
Main Results:
- Cells lacking Pol κ (KO TK+/-) exhibited higher sensitivity to MMC's cytotoxic and mutagenic effects compared to wild-type (WT TK+/-) cells.
- MMC induced significantly higher frequencies of loss of heterozygosity (LOH) and base substitutions at CpG sites in KO TK+/- cells.
- KO TK+/- cells showed increased sensitivity in sister chromatid exchange (SCE) assays, indicating enhanced DNA damage.
Conclusions:
- Pol κ acts as a modulating factor in mitomycin C-induced genotoxicity.
- The developed cell lines are valuable tools for assessing chemical genotoxicity across different Pol κ genetic backgrounds and multiple endpoints.
More Related Videos
11:08Proofreading and DNA Repair Assay Using Single Nucleotide Extension and MALDI-TOF Mass Spectrometry Analysis
Published on: June 19, 2018
09:39Author Spotlight: Combining Proximity Ligand Assay with Gamma-H2AX Staining to Characterize Protein Interactions in DNA Damage Response
Published on: August 2, 2024
Related Concept Videos
Translesion DNA Polymerases
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
Proofreading
Errors During Replication are Corrected by the DNA Polymerase...
Proofreading
DNA Damage can Stall the Cell Cycle
DNA Damage Can Stall the Cell Cycle
Nucleotide Excision Repair
Cells are regularly exposed to mutagens—factors in the environment that can damage DNA and generate mutations. UV radiation is one of the most common mutagens and is estimated to introduce a significant number of changes in DNA. These include bends or kinks in the structure, which can block DNA replication or transcription. If these errors are not fixed, the damage can cause mutations, which in turn can result in cancer or disease depending on which sequences are...