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Updated: Mar 8, 2026

Annotation of Plant Gene Function via Combined Genomics, Metabolomics and Informatics
Published on: June 17, 2012
Five species, many genotypes, broad phenotypic diversity: When agronomy meets functional ecology
Ivan Prieto1, Isabelle Litrico2, Cyrille Violle3
1CNRS, CEFE UMR 5175, Université de Montpellier-Université Paul Valéry-EPHE, 1919 Route de Mende 34293 Montpellier Cedex 5, France philippe.barre@inra.fr iprietoaguilar@gmail.com.
Plant domestication significantly impacts genetic diversity, with selection for yield indirectly affecting leaf traits. Ecotypes show greater intraspecific genetic variability (ITV) than cultivars, guiding future crop selection programs.
Area of Science:
- Ecology
- Evolutionary Biology
- Genetics
Background:
- Ecological theory offers insights into plant domestication causes and effects.
- The impact of domestication on intraspecific genetic variability (ITV) remains largely unexplored.
- Understanding genetic changes is crucial for sustainable agriculture and biodiversity conservation.
Purpose of the Study:
- To investigate how selection during plant domestication affects functional trait coordination and genetic differentiation.
- To quantify the extent of genetic diversity within functional traits in wild ecotypes and domesticated cultivars.
- To compare the intraspecific genetic variability (ITV) between natural ecotypes and selected cultivars.
Main Methods:
- Utilized 50 ecotypes and 35 cultivars from five grassland species.
- Quantified genetic diversity across various functional traits.
- Assessed genetic variability within populations of both natural ecotypes and selected cultivars.
Main Results:
- Cultivars generally exhibited larger size (height, growth rate) and increased specific leaf area (SLA).
- Substantial genetic variability was observed, averaging 63% and varying by trait (14% for leaf nitrogen content to 95.8% for growth rate).
- Intraspecific genetic variability (ITV) was greater for whole-plant traits than organ-level traits, consistent across ecotypes and cultivars, with ecotypes showing higher overall ITV.
Conclusions:
- Domesticated species possess significant genetic diversity, with varied heritability across functional traits.
- Selection for high yield has resulted in indirect selection of associated leaf traits.
- Findings aid in identifying target traits for selection programs, particularly for community-level selection strategies.
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