[Contamination of exosome preparations, isolated from biological fluids]
A E Grigor'eva1, N S Dyrkheeva1, O E Bryzgunova1
1Institute of Chemical Biology and Fundamental Medicine, SB RAS, Novosibirsk, Russia.
Abstract:
The aim of our study was to attract the attention of researchers at the problem of contamination of exosome preparations. Using a transmission electron microscope JEM-1400 ("JEOL", Japan) we have examined exosome preparations, isolated according to the conventional scheme of sequential centrifugation from different biological fluids: plasma and urine of healthy persons and patients with oncologic diseases, bovine serum, and culture fluid (MDCK, MDA-MB и MCF-7 cells). All exosome preparations (over 200) contained exosomes, which were identified by immuno-electron microscopy using antibodies to tetraspanins CD63 or CD9. Besides exosomes, all the studied preparations contained contaminating structures: distinct particles of low electron density without limiting membrane ("non-vesicles"). Two main kinds of the "non-vesicles" species were found in exosome preparations: 20-40 nm in size, representing 10-40% of all structures in the preparations; and 40-100 nm in size (identical to exosomes by size). Morphology of the "non-vesicles" allowed to identify them as lipoproteins of intermediate and low density (20-40 nm), and very low density (40-100 nm). The highest level of the contamination was detected in exosome preparations, isolated from blood samples. The results of our study indicate the need to control the composition of exosome preparation by electron microscopy and take into account the presence of contaminating structures in analysis of experimental data.
Insights
Contamination is common in exosome preparations, with lipoproteins often mistaken for exosomes. Electron microscopy is crucial for identifying these non-vesicle contaminants in research samples.
Area of Science:
- Biotechnology
- Nanomedicine
- Cell Biology
Background:
- Exosomes are crucial biomarkers and therapeutic agents.
- Current isolation methods may yield contaminated preparations.
- Accurate characterization of exosomes is vital for reliable research.
Purpose of the Study:
- To investigate contamination in exosome preparations.
- To identify non-exosomal structures in isolated samples.
- To highlight the importance of quality control in exosome research.
Main Methods:
- Transmission electron microscopy (JEM-1400) used for structural analysis.
- Immuno-electron microscopy with CD63/CD9 antibodies for exosome identification.
- Isolation of exosomes from diverse biological fluids (plasma, urine, serum, cell culture).
Main Results:
- All exosome preparations contained exosomes and contaminating "non-vesicles".
- Two main types of non-vesicles (20-40 nm and 40-100 nm) identified as lipoproteins.
- Highest contamination levels observed in plasma-derived exosome preparations.
Conclusions:
- Exosome preparations frequently contain lipoprotein contaminants.
- Electron microscopy is essential for distinguishing exosomes from non-vesicles.
- Researchers must account for contaminants in experimental data analysis.
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