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Updated: Mar 6, 2026

Isolation and Genome Analysis of Single Virions using 'Single Virus Genomics'
Published on: May 26, 2013
First complete genome sequence of a virulent bacteriophage infecting the opportunistic pathogen Serratia rubidaea
Shaozhen Xing1, Taping Ma2,3, Xianglilan Zhang1
1State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, People's Republic of China.
Abstract:
A Serratia rubidaea phage, vB_Sru IME250, was isolated from hospital sewage. The morphology suggested that phage vB_Sru IME250 should be classified as a member of the family Myoviridae. High-throughput sequencing revealed that the phage genome has 154,938 nucleotides and consists of 193 coding DNA sequences, 90 of which have putative functions. The genome of vB_Sru IME250 is a linear, double-stranded DNA with an average GC content of 40.04%. The phage has a relatively high similarity to Klebsiella phage 0507-KN2-1, with a genome coverage of 84%.
Insights
Researchers isolated a Serratia rubidaea phage, vB_Sru IME250, from hospital sewage. Genomic analysis revealed its classification within the Myoviridae family, with potential applications in phage therapy.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- Bacteriophages are viruses that infect bacteria and are increasingly explored for therapeutic applications.
- The emergence of antibiotic-resistant bacteria necessitates the discovery of novel antimicrobial agents, including bacteriophages.
- Hospital sewage can serve as a reservoir for diverse bacterial and viral communities.
Purpose of the Study:
- To isolate and characterize a novel bacteriophage infecting Serratia rubidaea.
- To determine the genomic features and taxonomic classification of the isolated phage.
- To assess the potential of the phage for further research and application.
Main Methods:
- Isolation of bacteriophage from hospital sewage.
- Morphological characterization using electron microscopy.
- High-throughput sequencing for whole-genome analysis.
- Bioinformatic analysis to identify coding sequences and assess genomic similarity.
Main Results:
- Isolation of a novel Serratia rubidaea phage, designated vB_Sru IME250.
- Morphological analysis suggested classification within the Myoviridae family.
- The phage genome is linear, double-stranded DNA (154,938 bp) with 193 predicted coding sequences.
- Genomic analysis revealed 40.04% GC content and 84% similarity to Klebsiella phage 0507-KN2-1.
Conclusions:
- vB_Sru IME250 is a novel Myoviridae family phage with a distinct genomic profile.
- The characterized phage represents a potential candidate for further investigation in phage therapy against Serratia rubidaea infections.
- Genomic data provides a foundation for understanding phage-host interactions and developing phage-based interventions.
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