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Updated: Mar 6, 2026

Overexpressing and Purifying a Toxic Nuclease from Escherichia coli
Published on: August 29, 2025
Cytotoxic Effect Associated with Overexpression of QNR Proteins in Escherichia coli
Jesús Machuca1,2, Paula Diaz de Alba1, Esther Recacha1
11 Unidad Intercentros de Enfermedades Infecciosas, Microbiología y Medicina Preventiva, Hospital Universitario Virgen Macarena , Seville, Spain .
Objective:
The objective was to evaluate the cytotoxic effect associated with overexpression of multiple Qnr-like plasmid-mediated quinolone resistance (PMQR) mechanisms in Escherichia coli.
Methods:
Coding regions of different PMQR genes (qnrA1, qnrB1, qnrC, qnrD1, qnrS1, and qepA2) and efsqnr were cloned into pET29a(+) vector and overexpressed in E. coli BL21. E. coli BL21 with and without an empty pET29a(+) vector were used as controls. The cytotoxic effect associated with PMQR mechanism overexpression was determined by transmission electron microscopy and viability assays.
Results:
Overexpressed qnr genes produced loss of bacterial viability in the range of 77-97% compared with the controls, comparable with loss of viability associated with EfsQnr overexpression (97%). No loss of viability was observed in E. coli overexpressing QepA2. In transmission electron microscopy assays, signs of cytotoxicity were observed in E. coli cells overexpressing EfsQnr and Qnr proteins (30-45% of the bacterial population showed morphological changes). Morphological changes were observed in less than 5% of bacterial populations from the control strains and E. coli overexpressing QepA2.
Conclusions:
Overexpression of qnr genes produces a cytotoxic cellular and structural effect in E. coli, the magnitude of which varies depending on the family of Qnr proteins.
Insights
Overexpressing Qnr genes in Escherichia coli causes significant bacterial death and cell damage, unlike QepA2. This cytotoxicity varies by Qnr protein family.
Area of Science:
- Microbiology
- Molecular Biology
- Bacterial Genetics
Background:
- Quinolone resistance in bacteria is a growing public health concern.
- Plasmid-mediated quinolone resistance (PMQR) mechanisms contribute to reduced susceptibility to fluoroquinolone antibiotics.
- The cytotoxic effects of PMQR gene overexpression in bacteria are not fully understood.
Purpose of the Study:
- To investigate the cytotoxic impact of overexpressing various Qnr-like PMQR mechanisms in Escherichia coli.
- To compare the cytotoxic effects of different Qnr families and the QepA2 efflux pump.
Main Methods:
- Cloning and overexpression of PMQR genes (qnrA1, qnrB1, qnrC, qnrD1, qnrS1, qepA2, efsqnr) in E. coli BL21.
- Utilizing E. coli BL21 with and without an empty vector as controls.
- Assessing cytotoxicity via transmission electron microscopy and bacterial viability assays.
Main Results:
- Overexpression of qnr genes led to significant bacterial viability loss (77-97%), similar to EfsQnr (97%).
- No viability loss was observed with QepA2 overexpression.
- Transmission electron microscopy revealed morphological changes in 30-45% of cells overexpressing EfsQnr and Qnr proteins, compared to <5% in controls and QepA2-overexpressing cells.
Conclusions:
- Overexpression of qnr genes induces a cytotoxic cellular and structural effect in E. coli.
- The extent of cytotoxicity is dependent on the specific Qnr protein family involved.
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