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Detection of Alternative Splicing During Epithelial-Mesenchymal Transition
Published on: October 9, 2014
Identification of a DNA Damage-Induced Alternative Splicing Pathway That Regulates p53 and Cellular Senescence
Jing Chen1,2, John Crutchley1,2, Dadong Zhang2
1Department of Pharmacology and Cancer Biology, Duke University School of Medicine, Durham, North Carolina.
Abstract:
Cellular responses to DNA damage are critical determinants of cancer development and aging-associated pathogenesis. Here, we identify and characterize a DNA-damage response (DDR) pathway that regulates alternative splicing of numerous gene products, including the human tumor suppressor TP53, and controls DNA damage-induced cellular senescence. In brief, ionizing radiation (IR) inhibits the activity of SMG1, a phosphoinositide-3-kinase-like kinase family member, reducing the binding of SMG1 to a specific region near exon 9 of p53 precursor mRNA and promoting the binding of ribosomal protein L26 (RPL26) to p53 pre-mRNA. RPL26, in turn, is required for the recruitment of the serine/arginine-rich splicing factor SRSF7 to p53 pre-mRNA and generation of alternatively spliced p53β RNA. Disruption of this pathway via selective knockout of p53β by CRISPR/Cas9 or downregulation of pathway constituents significantly reduces IR-induced senescence markers, and cells lacking p53β expression fail to transcriptionally repress negative regulators of cellular senescence and aging.Significance: We identified a new component of the DDR pathway that regulates alternative splicing of messenger RNAs, including human TP53 mRNA. Modulation of this regulatory pathway affects DNA-damage induction of cellular senescence markers. Cancer Discov; 7(7); 766-81. ©2017 AACR.This article is highlighted in the In This Issue feature, p. 653.
Insights
This study reveals a new DNA-damage response pathway regulating alternative splicing, impacting cellular senescence and aging. The pathway involves SMG1, RPL26, and SRSF7, affecting TP53 splicing and senescence markers.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- Cellular responses to DNA damage are crucial for preventing cancer and aging.
- The DNA-damage response (DDR) pathway's role in regulating gene expression and cellular fate is complex.
- Alternative splicing is increasingly recognized as a key modulator of cellular processes.
Purpose of the Study:
- To identify and characterize a novel DDR pathway that controls alternative splicing.
- To investigate the pathway's role in DNA damage-induced cellular senescence.
- To elucidate the molecular mechanisms linking DNA damage, splicing, and senescence.
Main Methods:
- Ionizing radiation (IR) treatment to induce DNA damage.
- CRISPR/Cas9 gene editing to selectively knockout p53β.
- Western blotting and RT-PCR to assess protein and RNA levels.
- Analysis of splicing factor recruitment and activity.
Main Results:
- Ionizing radiation inhibits SMG1 activity, altering p53 pre-mRNA splicing.
- RPL26 and SRSF7 are recruited to p53 pre-mRNA, promoting the generation of p53β.
- Disruption of this pathway reduces senescence markers and impairs the repression of senescence regulators.
- Cells lacking p53β fail to repress negative regulators of cellular senescence and aging.
Conclusions:
- A new DDR pathway regulating alternative splicing, including TP53, has been identified.
- This pathway is critical for DNA damage-induced cellular senescence.
- Modulation of this pathway impacts cellular aging and cancer pathogenesis.
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