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Author Spotlight: Advancements in Molecular Biomarker Testing for Non-Squamous Non-Small Cell Lung Cancer
Published on: September 8, 2023
Pulmonary Sarcomatoid Carcinomas Commonly Harbor Either Potentially Targetable Genomic Alterations or High Tumor
Alexa B Schrock1, Shuyu D Li2, Garrett M Frampton1
1Foundation Medicine, Inc., Cambridge, Massachusetts.
Introduction:
Pulmonary sarcomatoid carcinoma (PSC) is a high-grade NSCLC characterized by poor prognosis and resistance to chemotherapy. Development of targeted therapeutic strategies for PSC has been hampered because of limited and inconsistent molecular characterization.
Methods:
Hybrid capture-based comprehensive genomic profiling was performed on DNA from formalin-fixed paraffin-embedded sections of 15,867 NSCLCs, including 125 PSCs (0.8%). Tumor mutational burden (TMB) was calculated from 1.11 megabases (Mb) of sequenced DNA.
Results:
The median age of the patients with PSC was 67 years (range 32-87), 58% were male, and 78% had stage IV disease. Tumor protein p53 gene (TP53) genomic alterations (GAs) were identified in 74% of cases, which had genomics distinct from TP53 wild-type cases, and 62% featured a GA in KRAS (34%) or one of seven genes currently recommended for testing in the National Comprehensive Cancer Network NSCLC guidelines, including the following: hepatocyte growth factor receptor gene (MET) (13.6%), EGFR (8.8%), BRAF (7.2%), erb-b2 receptor tyrosine kinase 2 gene (HER2) (1.6%), and ret proto-oncogene (RET) (0.8%). MET exon 14 alterations were enriched in PSC (12%) compared with non-PSC NSCLCs (∼3%) (p < 0.0001) and were more prevalent in PSC cases with an adenocarcinoma component. The fraction of PSC with a high TMB (>20 mutations per Mb) was notably higher than in non-PSC NSCLC (20% versus 14%, p = 0.056). Of nine patients with PSC treated with targeted or immunotherapies, three had partial responses and three had stable disease.
Conclusion:
Potentially targetable GAs in National Comprehensive Cancer Network NSCLC genes (30%) or intermediate or high TMB (43%, >10 mutations per Mb) were identified in most of the PSC cases. Thus, the use of comprehensive genomic profiling in clinical care may provide important treatment options for a historically poorly characterized and difficult to treat disease.
Insights
Pulmonary sarcomatoid carcinoma (PSC) is a rare NSCLC with poor prognosis. Comprehensive genomic profiling reveals actionable targets and high tumor mutational burden, offering new treatment avenues.
Area of Science:
- Oncology
- Genomics
- Pulmonary Medicine
Background:
- Pulmonary sarcomatoid carcinoma (PSC) is an aggressive non-small cell lung cancer (NSCLC) subtype.
- PSC is associated with poor prognosis and resistance to conventional chemotherapy.
- Limited molecular characterization has hindered the development of targeted therapies for PSC.
Purpose of the Study:
- To comprehensively characterize the genomic landscape of PSC.
- To identify potentially targetable genomic alterations (GAs) and assess tumor mutational burden (TMB) in PSC.
- To explore the utility of comprehensive genomic profiling (CGP) in guiding treatment decisions for PSC patients.
Main Methods:
- Hybrid capture-based CGP was performed on 15,867 NSCLC cases, including 125 PSCs.
- Tumor mutational burden (TMB) was calculated from sequenced DNA.
- Genomic alterations were analyzed in key NSCLC-related genes.
Main Results:
- TP53 GAs were found in 74% of PSC cases.
- KRAS, MET, EGFR, BRAF, HER2, and RET alterations were identified in 62% of PSCs.
- MET exon 14 alterations were significantly enriched in PSC (12%) compared to non-PSC NSCLC (3%).
- A higher fraction of PSC cases exhibited high TMB (>20 mutations/Mb) compared to non-PSC NSCLC (20% vs. 14%).
- Among nine patients treated with targeted or immunotherapies, six showed clinical benefit (partial response or stable disease).
Conclusions:
- Most PSC cases harbor potentially targetable GAs or intermediate/high TMB.
- CGP can identify actionable targets in PSC, a historically challenging disease.
- Genomic profiling may offer crucial treatment options for PSC patients.
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