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Science in the cloud (SIC): A use case in MRI connectomics.
Gregory Kiar1,2, Krzysztof J Gorgolewski3, Dean Kleissas4
1Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.
Scientists can now achieve reproducible research using "science in the cloud" (SIC). This framework uses cloud computing and containers to make scientific data analysis accessible and extensible, accelerating discovery.
Area of Science:
- Computational Science
- Data Science
- Scientific Computing
Background:
- Modern scientific endeavors generate vast, complex datasets, shifting focus from data collection to analysis.
- Reproducibility and extensibility of scientific results are hindered by a lack of standardized data sharing mechanisms.
- Advancements in data organization and code portability present opportunities for improved scientific communication.
Purpose of the Study:
- To propose an accessible and extensible framework for reproducible research.
- To leverage existing technologies for enhanced scientific discovery and collaboration.
Main Methods:
- Utilizing scientific containers for code portability.
- Implementing cloud computing for scalable data analysis.
- Employing cloud data services for data accessibility.
- Developing a web service for interactive data and tool engagement.
Main Results:
- Demonstrated the capability to perform computations within the cloud environment.
- Successfully deployed a web service for interactive exploration of scientific tools and data.
- Established a model for reproducible and extensible scientific research.
Conclusions:
- The 'science in the cloud' (SIC) model offers a practical solution for reproducible research.
- SIC facilitates community-driven acceleration of scientific breakthroughs through replication and extension.
- The framework promotes enhanced interaction with scientific tools and data, fostering collaborative advancement.
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