Related Experiment Videos
Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain CSF-298-10
Jason P Evenhuis1, Scott E LaPatra2, Joerg Graf3
1U.S. Department of Agriculture, National Center for Cool and Cold Water Aquaculture, Agriculture Research Service, Kearneysville, West Virginia, USA jason.evenhuis@ars.usda.gov.
Genome Announcements
|April 15, 2017
Summary
We present the genome assembly of Flavobacterium columnare CSF-298-10, a fish pathogen causing columnaris disease. This genomic data provides insights into the bacterium
Area of Science:
- Microbiology
- Genomics
- Aquatic Animal Health
Background:
- Columnaris disease, caused by Flavobacterium columnare, significantly impacts aquaculture, particularly trout farming.
- Understanding the genetic makeup of F. columnare strains is crucial for disease management and prevention.
Purpose of the Study:
- To provide a draft genome assembly of Flavobacterium columnare strain CSF-298-10.
- To facilitate further research into the virulence factors and evolution of this important fish pathogen.
Main Methods:
- Isolation of Flavobacterium columnare CSF-298-10 from an outbreak.
- Whole-genome sequencing and assembly.
Main Results:
- A draft genome assembly of F. columnare CSF-298-10 was generated.
- The genome comprises 13 contigs, totaling 3,284,579 base pairs.
- The assembly contains 2,933 predicted coding genes with an average G+C content of 31.5%.
Conclusions:
- The genome assembly provides a valuable resource for studying Flavobacterium columnare.
- This genomic data can aid in developing strategies to control columnaris disease in fish populations.