Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Animating and exploring phylogenies with fibre plots.

William D Pearse1

  • 1Department of Biology & Ecology Center, Utah State University, Logan, UT, USA.

F1000Research
|April 20, 2017
PubMed
Summary

Phylogenetic visualization has seen limited innovation since Darwin. This essay introduces fibre plots, a novel graphic for visualizing phylogenetic trees and understanding diversification patterns.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Variation in near-surface soil temperature drives plant assemblage differentiation across aspect.

Ecology and evolution·2024
Same author

Bumble bee responses to climate and landscapes: Investigating habitat associations and species assemblages across geographic regions in the United States of America.

Global change biology·2024
Same author

Phylogenetic Biodiversity Metrics Should Account for Both Accumulation and Attrition of Evolutionary Heritage.

Systematic biology·2023
Same author

Consistent, linear phenological shifts across a century of observations in South Korea.

The New phytologist·2023
Same author

Disorder or a new order: How climate change affects phenological variability.

Ecology·2022
Same author

Signatures of increasing environmental stress in bumblebee wings over the past century: Insights from museum specimens.

The Journal of animal ecology·2022

Area of Science:

  • Evolutionary Biology
  • Data Visualization
  • Computational Biology

Background:

  • Traditional phylogenetic tree representations have remained largely unchanged since their inception.
  • Advances in data visualization have not significantly impacted how phylogenies are displayed.
  • Current methods may not effectively convey complex evolutionary histories.

Purpose of the Study:

  • To review recent advancements in phylogenetic visualization.
  • To introduce a new graphical method, the fibre plot, for representing phylogenies.
  • To demonstrate the utility of fibre plots for analyzing evolutionary patterns.

Main Methods:

  • Review of existing literature on phylogenetic visualization techniques.
  • Development and conceptualization of the fibre plot graphic.
Keywords:
3Danimationfractalphylogenytree of lifevisualisation

Related Experiment Videos

  • Application of the fibre plot metaphor to represent phylogenetic change.

    • Main Results:

    • Identification of key recent advances in phylogenetic visualization.
    • Introduction of the fibre plot as a novel visualization tool.
    • Demonstration of fibre plots' potential for rapid overview of diversification.

    Conclusions:

    • Fibre plots offer a new perspective on phylogenetic data.
    • This visualization method aids in understanding the timing and scale of diversification.
    • Fibre plots represent a significant step forward in phylogenetic data representation.