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Querying Archetype-Based Electronic Health Records Using Hadoop and Dewey Encoding of openEHR Models.

Erik Sundvall1, Fang Wei-Kleiner1, Sergio M Freire2

  • 1Linköping University, Linköping, Sweden.

Studies in Health Technology and Informatics
|April 21, 2017
PubMed
Summary

Archetype-based Electronic Health Record (EHR) systems can be optimized for large-scale querying using Dewey encoding. This approach enables efficient data retrieval from millions of patient records with sub-minute response times.

Keywords:
ArchetypesComputerizedDatabase Management SystemsDewey encodingEpidemiologyHadoopMedical Record SystemsXMLopenEHR

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Area of Science:

  • Health Informatics
  • Computer Science

Background:

  • Archetype-based Electronic Health Record (EHR) systems, utilizing models like openEHR, aim for flexibility in data model updates.
  • Ad-hoc, population-wide querying for research, such as epidemiology, presents a significant challenge in these adaptable EHR environments.

Purpose of the Study:

  • To implement and test an archetype-aware Dewey encoding optimization for EHR systems.
  • To enhance the efficiency of large-scale, ad-hoc querying within relational database management systems (RDBMS) and distributed frameworks like Hadoop.

Main Methods:

  • Developed and implemented an archetype-aware Dewey encoding optimization strategy.
  • Tested the optimization on a nine-node Hadoop cluster with over 4 million real patient EHR records.
  • Utilized relational operations within the Hadoop framework for data processing and querying.

Main Results:

  • Achieved sub-minute response times for complex queries on a large EHR dataset.
  • Demonstrated the feasibility of the Dewey encoding optimization in a distributed computing environment.
  • Validated the system's capability to handle large-scale, exploratory data analysis.

Conclusions:

  • The archetype-aware Dewey encoding optimization significantly improves query performance in EHR systems.
  • This method offers a practical solution for enabling large-scale epidemiological and exploratory research on EHR data.
  • The approach supports efficient data retrieval without extensive programming or database modifications.