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Programmatic access to bioinformatics tools from EMBL-EBI update: 2017.

Szymon Chojnacki1, Andrew Cowley1, Joon Lee1

  • 1European Bioinformatics Institute, EMBL Outstation, Wellcome Trust Genome Campus, Hinxton, CB10 1SD Cambridge, UK.

Nucleic Acids Research
|April 22, 2017
PubMed
Summary
This summary is machine-generated.

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The European Molecular Biology Laboratory

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Data Science

Background:

  • The European Molecular Biology Laboratory's European Bioinformatics Institute (EMBL-EBI) has offered free bioinformatics tools since 2009.
  • Programmatic access via Web Services APIs is crucial for handling high-throughput data in fields like proteomics and metagenomics.

Purpose of the Study:

  • To provide an update on the enhancements to the EMBL-EBI's Job Dispatcher APIs.
  • To detail the governance structure supporting these APIs.

Main Methods:

  • Utilizing SOAP and RESTful approaches for programmatic access.
  • Regular review of tool usage to ensure optimal availability and support.

Main Results:

  • The Job Dispatcher APIs have received recent enhancements.

Related Experiment Videos

  • The governance framework for these APIs has been updated.
  • Conclusions:

    • Continued improvement of programmatic access to bioinformatics tools is essential.
    • The EMBL-EBI remains committed to providing robust and accessible bioinformatics resources.