Related Experiment Video
Updated: Mar 3, 2026

05:57
Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
Published on: April 26, 2024
933
Development and Implementation of Advanced Fitting Methods for the Calculation of Accurate Molecular Structures
Marco Mendolicchio1, Emanuele Penocchio1, Daniele Licari1
1Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126 Pisa, Italy.
Journal of Chemical Theory and Computation
|April 25, 2017
Summary
Accurate molecular structures are crucial for understanding molecular properties. The new MSR software offers a cost-effective, semiexperimental method for precise equilibrium structure determination, validated with glycine.
Area of Science:
- Molecular modeling and computational chemistry.
- Quantum chemistry and physical properties of molecules.
Background:
- Accurate molecular structures are essential for understanding molecular properties, from electronic structure to dynamics.
- The semiexperimental approach, using moments of inertia from isotopologues, provides accurate results cost-effectively compared to high-level quantum methods.
Purpose of the Study:
- To present the Molecular Structure Refinement (MSR) software for determining equilibrium molecular structures.
- To detail the implementation and advanced features of the MSR software, including its graphical user interface.
Main Methods:
- Utilizing a semiexperimental approach based on nonlinear least-squares fitting of moments of inertia.
- Implementing advanced features such as automatic generation of internal coordinates (A1 symmetry) and the method of predicate observations.
- Validating the software with various test molecules and an application to glycine.
Main Results:
- The MSR software enables accurate equilibrium structure determination via the semiexperimental approach.
- Novel features like automatic internal coordinate generation and predicate observations enhance usability and accuracy.
- Successful determination of the semiexperimental structure for glycine's most stable conformer.
Conclusions:
- The MSR software provides a powerful, user-friendly tool for precise molecular structure determination.
- The semiexperimental method, enhanced by MSR's features, offers a viable alternative to computationally expensive quantum chemical methods.
- The successful application to glycine demonstrates the software's utility for complex molecular systems.
Related Concept Videos
Molecular Models
44.3K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
44.3K
Fischer Projections
17.0K
Learning to draw Fischer projections of molecules and understanding their relevance plays a crucial role in the visual depiction of organic molecules. A Fischer projection is a two-dimensional projection on a planar surface to simplify the three-dimensional wedge–dash representation of molecules. This is especially helpful in the case of molecules with multiple chiral centers that can be difficult to draw. Here, all the bonds of interest are represented as horizontal or vertical lines. While...
17.0K
Molecular Shapes
63.0K
Molecules have characteristic shapes that are crucial for their function. The arrangement of various electron groups around the central atom dictates their molecular geometry. Electron pairs in the valence shell of a central atom will adopt an arrangement that minimizes repulsions between the electron pairs by maximizing the distance between them. The valence electrons form either bonding pairs, located primarily between bonded atoms, or lone pairs.
Two regions of electron density in a diatomic...
Two regions of electron density in a diatomic...
63.0K
Determination of Crystal Structures
12
In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...
12

