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Updated: Mar 3, 2026

A Reporter Based Cellular Assay for Monitoring Splicing Efficiency
Published on: September 15, 2021
Transcriptional mutagenesis reduces splicing fidelity in mammalian cells
João A Paredes1, Monika Ezerskyte1, Matteo Bottai2
1Unit of Biochemical Toxicology, Institute of Environmental Medicine, Karolinska Institutet, 171 77 Stockholm, Sweden.
Abstract:
Splicing fidelity is essential to the maintenance of cellular functions and viability, and mutations or natural variations in pre-mRNA sequences and consequent alteration of splicing have been implicated in the etiology and progression of numerous diseases. The extent to which transcriptional errors or lesion-induced transcriptional mutagenesis (TM) influences splicing fidelity is not currently known. To investigate this, we employed site-specific DNA lesions on the transcribed strand of a minigene splicing reporter in normal mammalian cells. These were the common mutagenic lesions O6-methylguanine (O6-meG) and 8-oxoguanine (8-oxoG). The minigene splicing reporters were derived from lamin A (LMNA) and proteolipid protein 1 (PLP1), both with known links to human diseases that result from deregulated splicing. In cells with active DNA repair, 1-4% misincorporation occurred opposite the lesions, which increased to 20-40% when repair was compromised. Furthermore, our results reveal that TM at a splice site significantly reduces in vivo splicing fidelity, thereby changing the relative expression of alternative splicing forms in mammalian cells. These findings suggest that splicing defects caused by transcriptional errors can potentially lead to phenotypic cellular changes and increased susceptibility to the development of disease.
Insights
Transcriptional errors at DNA lesions can disrupt pre-mRNA splicing fidelity. This disruption may lead to altered protein production and increased disease susceptibility.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Splicing fidelity is crucial for cellular function and health.
- Altered splicing is linked to various human diseases.
- The impact of transcriptional errors on splicing fidelity is unknown.
Purpose of the Study:
- To investigate how DNA lesions during transcription affect splicing fidelity.
- To determine if transcriptional mutagenesis influences alternative splicing outcomes.
Main Methods:
- Utilized minigene splicing reporters derived from LMNA and PLP1 genes.
- Introduced site-specific DNA lesions (O6-methylguanine, 8-oxoguanine) on the transcribed strand.
- Assessed splicing fidelity in mammalian cells with active and compromised DNA repair pathways.
Main Results:
- DNA lesions caused 1-4% misincorporation in cells with active DNA repair.
- Misincorporation increased to 20-40% when DNA repair was compromised.
- Transcriptional mutagenesis at splice sites significantly reduced in vivo splicing fidelity, altering alternative splicing patterns.
Conclusions:
- Transcriptional errors at DNA lesions can impair splicing fidelity.
- This impairment can lead to altered splicing patterns and potential cellular dysfunction.
- Splicing defects resulting from transcriptional errors may contribute to disease development.
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