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Updated: Mar 2, 2026

Preparation of Meiotic Chromosome Spreads from Mouse Oocytes for Assessment of Synapsis and Recombination
Published on: July 18, 2025
The PRDM9 KRAB domain is required for meiosis and involved in protein interactions
Yukiko Imai1, Frédéric Baudat1, Miguel Taillepierre2
1Institut de Génétique Humaine UMR9002 CNRS-Université de Montpellier, 141 rue de la cardonille, 34396, Montpellier cedex 05, France.
Abstract:
PR domain-containing protein 9 (PRDM9) is a major regulator of the localization of meiotic recombination hotspots in the human and mouse genomes. This role involves its DNA-binding domain, which is composed of a tandem array of zinc fingers, and PRDM9-dependent trimethylation of histone H3 at lysine 4. PRDM9 is a member of the PRDM family of transcription regulators, but unlike other family members, it contains a Krüppel-associated box (KRAB)-related domain that is predicted to be a potential protein interaction domain. Here, we show that truncation of the KRAB domain of mouse PRDM9 leads to loss of PRDM9 function and altered meiotic prophase and gametogenesis. In addition, we identified proteins that interact with the KRAB domain of PRDM9 in yeast two-hybrid assay screens, particularly CXXC1, a member of the COMPASS complex. We also show that CXXC1 interacts with IHO1, an essential component of the meiotic double-strand break (DSB) machinery. As CXXC1 is orthologous to Saccharomyces cerevisiae Spp1 that links DSB sites to the DSB machinery on the chromosome axis, we propose that these molecular interactions involved in the regulation of meiotic DSB formation are conserved in mouse meiosis.
Insights
The Krüppel-associated box (KRAB) domain of PR domain-containing protein 9 (PRDM9) is crucial for its function in regulating meiotic recombination hotspots. Its interaction with CXXC1 suggests conserved mechanisms for double-strand break formation in mouse meiosis.
Area of Science:
- Genetics
- Molecular Biology
- Reproductive Biology
Background:
- PR domain-containing protein 9 (PRDM9) is a key regulator of meiotic recombination hotspots in mammals.
- PRDM9 utilizes its DNA-binding domain and histone modifications for hotspot localization.
- PRDM9 possesses a unique Krüppel-associated box (KRAB) domain with predicted protein interaction functions.
Purpose of the Study:
- To investigate the functional significance of the KRAB domain in mouse PRDM9.
- To identify proteins interacting with the PRDM9 KRAB domain.
- To elucidate the role of these interactions in meiotic double-strand break (DSB) formation.
Main Methods:
- Truncation of the KRAB domain in mouse PRDM9.
- Yeast two-hybrid assays to identify interacting proteins.
- Analysis of meiotic prophase and gametogenesis in mutant mice.
- Investigating protein-protein interactions involving CXXC1 and IHO1.
Main Results:
- Truncation of the PRDM9 KRAB domain resulted in loss of function, affecting meiotic prophase and gametogenesis.
- CXXC1, a COMPASS complex member, was identified as a PRDM9 KRAB-interacting protein.
- CXXC1 also interacts with IHO1, a component of the meiotic DSB machinery.
Conclusions:
- The KRAB domain of PRDM9 is essential for its meiotic functions.
- PRDM9 interacts with the meiotic DSB machinery via CXXC1.
- These molecular interactions suggest conserved mechanisms for regulating meiotic DSB formation in mouse meiosis.
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